Class Hierarchy

Go to the graphical class hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

• AbstractBoundaryCondition< SPACE_DIM >
  • ConstBoundaryCondition< SPACE_DIM >
  • FunctionalBoundaryCondition< SPACE_DIM >
  • StimulusBoundaryCondition< SPACE_DIM >
• AbstractBoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
  • BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AbstractCardiacCellFactory< ELEMENT_DIM, SPACE_DIM >
  • PlaneStimulusCellFactory< CELL, ELEMENT_DIM, SPACE_DIM >
    • GeneralPlaneStimulusCellFactory< CELL, ELEMENT_DIM, SPACE_DIM >
• AbstractCardiacCellFactory< DIM >
  • BathCellFactory< DIM, CELLTYPE >
  • RampedQuarterStimulusCellFactory< CELL, DIM >
  • ZeroStimulusCellFactory< CELL, DIM >
• AbstractCardiacCellFactory< SPACE_DIM >
  • HeartConfigRelatedCellFactory< SPACE_DIM >
• AbstractCardiacCellInterface
  • AbstractCardiacCell
    • AbstractBackwardEulerCardiacCell< SIZE >
    • CML_noble_varghese_kohl_noble_1998_basic_with_sac
    • FakeBathCell
    • FitzHughNagumo1961OdeSystem
  • AbstractCvodeCell
• AbstractCellCycleModelOdeSolver
  • CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >
  • CellCycleModelOdeSolver< CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver >
• AbstractCellPopulation< DIM >::Iterator
• AbstractChasteRegion< SPACE_DIM >
  • ChasteCuboid< SPACE_DIM >
  • ChasteEllipsoid< SPACE_DIM >
  • ChasteNodesList< SPACE_DIM >
• AbstractConductivityTensors< ELEMENT_DIM, SPACE_DIM >
  • AxisymmetricConductivityTensors< ELEMENT_DIM, SPACE_DIM >
  • OrthotropicConductivityTensors< ELEMENT_DIM, SPACE_DIM >
• AbstractConductivityTensors< ELEMENT_DIM, ELEMENT_DIM >
• AbstractContractionModel
  • AbstractAlgebraicContractionModel
    • NonPhysiologicalContractionModel
  • AbstractOdeBasedContractionModel
    • Kerchoffs2003ContractionModel
    • Nash2004ContractionModel
    • NhsContractionModel
      • NhsModelWithBackwardSolver
• AbstractCryptStatistics
  • CryptProjectionStatistics
  • CryptStatistics
• AbstractDataReader
  • ColumnDataReader
• AbstractDataWriter
  • ColumnDataWriter
    • ParallelColumnDataWriter
• AbstractDynamicallyLoadableEntity
• AbstractElement< ELEMENT_DIM, SPACE_DIM >
  • AbstractTetrahedralElement< ELEMENT_DIM, SPACE_DIM >
    • BoundaryElement< ELEMENT_DIM, SPACE_DIM >
    • Element< ELEMENT_DIM, SPACE_DIM >
  • VertexElement< ELEMENT_DIM, SPACE_DIM >
• AbstractElement< 0, SPACE_DIM >
  • AbstractTetrahedralElement< 0, SPACE_DIM >
• AbstractElement< 1, SPACE_DIM >
  • VertexElement< 1, SPACE_DIM >
• AbstractFunctionalCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
  • PseudoEcgCalculator< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
• AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
  • Hdf5ToCmguiConverter< ELEMENT_DIM, SPACE_DIM >
  • Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >
  • Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM >
• AbstractIncompressibleMaterialLaw< DIM >
  • AbstractIsotropicIncompressibleMaterialLaw< DIM >
    • ExponentialMaterialLaw< DIM >
    • MooneyRivlinMaterialLaw< DIM >
  • AbstractIsotropicIncompressibleMaterialLaw< 3 >
    • PolynomialMaterialLaw3d
  • PoleZeroMaterialLaw< DIM >
    • NashHunterPoleZeroLaw< DIM >
• AbstractIncompressibleMaterialLaw< 2 >
  • SchmidCostaExponentialLaw2d
• AbstractIvpOdeSolver
  • AbstractOneStepIvpOdeSolver
    • BackwardEulerIvpOdeSolver
    • EulerIvpOdeSolver
      • MockEulerIvpOdeSolver
    • HeunIvpOdeSolver
    • RungeKutta2IvpOdeSolver
    • RungeKutta4IvpOdeSolver
  • CvodeAdaptor
  • RungeKuttaFehlbergIvpOdeSolver
• AbstractLinearEllipticPde< ELEMENT_DIM, SPACE_DIM >
• AbstractLinearEllipticPde< DIM, DIM >
  • AveragedSourcePde< DIM >
  • CellwiseSourcePde< DIM >
  • SimpleUniformSourcePde< DIM >
• AbstractLinearParabolicPde< ELEMENT_DIM, SPACE_DIM >
• AbstractMesh< ELEMENT_DIM, SPACE_DIM >::NodeIterator
• AbstractMeshReader< ELEMENT_DIM, SPACE_DIM >
  • AbstractCachedMeshReader< ELEMENT_DIM, SPACE_DIM >
    • FemlabMeshReader< ELEMENT_DIM, SPACE_DIM >
    • MemfemMeshReader< ELEMENT_DIM, SPACE_DIM >
  • GenericMeshReader< ELEMENT_DIM, SPACE_DIM >
  • TrianglesMeshReader< ELEMENT_DIM, SPACE_DIM >
  • VertexMeshReader< ELEMENT_DIM, SPACE_DIM >
  • VtkMeshReader< ELEMENT_DIM, SPACE_DIM >
• AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >
  • AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >
    • CmguiMeshWriter< ELEMENT_DIM, SPACE_DIM >
    • CmguiMeshWriter< DIM, DIM >
      • CmguiDeformedSolutionsWriter< DIM >
    • MeshalyzerMeshWriter< ELEMENT_DIM, SPACE_DIM >
    • TrianglesMeshWriter< ELEMENT_DIM, SPACE_DIM >
    • VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >
  • VertexMeshWriter< ELEMENT_DIM, SPACE_DIM >
• AbstractModifier
  • DummyModifier
  • FactorModifier
  • FixedModifier
  • TimeModifier
• AbstractNonlinearElasticitySolver< DIM >
  • NonlinearElasticitySolver< DIM >
    • AbstractCardiacMechanicsSolver< DIM >
      • ExplicitCardiacMechanicsSolver< DIM >
      • ImplicitCardiacMechanicsSolver< DIM >
• AbstractNonlinearEllipticPde< SPACE_DIM >
• AbstractNonlinearSolver
  • SimpleNewtonNonlinearSolver
  • SimplePetscNonlinearSolver
• AbstractOdeSystemInformation
  • CellwiseOdeSystemInformation< ODE_SYSTEM >
  • CombinedOdeSystemInformation
  • OdeSystemInformation< ODE_SYSTEM >
• AbstractParameterisedSystem< VECTOR >
• AbstractParameterisedSystem< N_Vector >
  • AbstractCvodeCell
• AbstractParameterisedSystem< std::vector< double > >
  • AbstractOdeSystem
    • AbstractCardiacCell
    • AbstractOdeBasedContractionModel
    • AbstractOdeSystemWithAnalyticJacobian
      • TysonNovak2001OdeSystem
    • Alarcon2004OxygenBasedCellCycleOdeSystem
    • CombinedOdeSystem
    • Mirams2010WntOdeSystem
    • VanLeeuwen2009WntSwatCellCycleOdeSystem
    • WntCellCycleOdeSystem
• AbstractStimulusFunction
  • MultiStimulus
  • RegularStimulus
  • SimpleStimulus
  • ZeroStimulus
• AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::ElementIterator
• AbstractUntemplatedConvergenceTester
  • AbstractConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
    • OdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
    • OdePdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
    • PdeConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
    • SpaceConvergenceTester< CELL, CARDIAC_PROBLEM, DIM, PROBLEM_DIM >
• ArchiveLocationInfo
• ArchiveOpener< Archive, Stream >
• enable_shared_from_this
  • Cell
• noncopyable
  • AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM >
    • MonodomainTissue< ELEMENT_DIM, SPACE_DIM >
  • AbstractCardiacTissue< SPACE_DIM >
    • BidomainTissue< SPACE_DIM >
  • AbstractCellCycleModel
    • AbstractOdeBasedCellCycleModel
      • AbstractWntOdeBasedCellCycleModel
        • AbstractVanLeeuwen2009WntSwatCellCycleModel
          • VanLeeuwen2009WntSwatCellCycleModelHypothesisOne
          • VanLeeuwen2009WntSwatCellCycleModelHypothesisTwo
        • WntCellCycleModel
          • StochasticWntCellCycleModel
      • Alarcon2004OxygenBasedCellCycleModel
      • TysonNovakCellCycleModel
    • AbstractSimpleCellCycleModel
      • AbstractSimpleGenerationBasedCellCycleModel
        • FixedDurationGenerationBasedCellCycleModel
        • StochasticDurationGenerationBasedCellCycleModel
      • SimpleOxygenBasedCellCycleModel
        • StochasticOxygenBasedCellCycleModel
      • SimpleWntCellCycleModel
        • SingleOdeWntCellCycleModel
  • AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, CAN_ASSEMBLE_VECTOR, CAN_ASSEMBLE_MATRIX, INTERPOLATION_LEVEL >
  • AbstractFeObjectAssembler< DIM, DIM, 2, false, true, CARDIAC >
    • BidomainMassMatrixAssembler< DIM >
  • AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, 1, false, true, NORMAL >
    • MassMatrixAssembler< ELEMENT_DIM, SPACE_DIM >
  • AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, 1, true, true, CARDIAC >
    • MonodomainAssembler< ELEMENT_DIM, SPACE_DIM >
  • AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, 2, true, true, CARDIAC >
    • BidomainAssembler< ELEMENT_DIM, SPACE_DIM >
      • BidomainWithBathAssembler< ELEMENT_DIM, SPACE_DIM >
  • AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, true, true, INTERPOLATION_LEVEL >
    • AbstractAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, INTERPOLATION_LEVEL >
    • AbstractAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, 1, NORMAL >
      • SimpleLinearEllipticSolver< ELEMENT_DIM, SPACE_DIM >
      • SimpleLinearEllipticSolver< DIM, DIM >
        • CellBasedSimulationWithPdesAssembler< DIM >
      • SimpleLinearParabolicSolver< ELEMENT_DIM, SPACE_DIM >
  • AbstractFeObjectAssembler< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM, true, true, NONLINEAR >
    • AbstractNonlinearAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
    • AbstractNonlinearAssemblerSolverHybrid< ELEMENT_DIM, SPACE_DIM, 1 >
      • SimpleNonlinearEllipticSolver< ELEMENT_DIM, SPACE_DIM >
  • AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
    • AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
    • AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 1 >
      • AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >
        • BasicMonodomainSolver< ELEMENT_DIM, SPACE_DIM >
        • MatrixBasedMonodomainSolver< ELEMENT_DIM, SPACE_DIM >
      • SimpleLinearParabolicSolver< ELEMENT_DIM, SPACE_DIM >
    • AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 2 >
      • AbstractBidomainSolver< ELEMENT_DIM, SPACE_DIM >
        • BasicBidomainSolver< ELEMENT_DIM, SPACE_DIM >
        • MatrixBasedBidomainSolver< ELEMENT_DIM, SPACE_DIM >
    • AbstractStaticLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
    • AbstractStaticLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 1 >
      • SimpleLinearEllipticSolver< ELEMENT_DIM, SPACE_DIM >
      • SimpleLinearEllipticSolver< DIM, DIM >
  • AbstractMesh< ELEMENT_DIM, SPACE_DIM >
    • AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
      • DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
      • TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
        • MutableMesh< ELEMENT_DIM, SPACE_DIM >
        • MutableMesh< 2, 2 >
          • Cylindrical2dMesh
        • NonCachedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >
      • TetrahedralMesh< DIM, DIM >
        • QuadraticMesh< DIM >
    • AbstractTetrahedralMesh< ELEMENT_DIM, ELEMENT_DIM >
    • AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM >
    • VertexMesh< ELEMENT_DIM, SPACE_DIM >
      • MutableVertexMesh< ELEMENT_DIM, SPACE_DIM >
      • MutableVertexMesh< 2, 2 >
        • Cylindrical2dVertexMesh
  • AbstractUntemplatedCardiacProblem
    • AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >
    • AbstractCardiacProblem< DIM, DIM, 2 >
      • BidomainProblem< DIM >
        • BidomainWithBathProblem< DIM >
    • AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, 1 >
      • MonodomainProblem< ELEMENT_DIM, SPACE_DIM >
  • Cell
  • CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >
  • CellCycleModelOdeSolver< CELL_CYCLE_MODEL, BackwardEulerIvpOdeSolver >
• boost::serialization::boost::serialization::version< AbstractCardiacProblem< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM > >
• boost::serialization::boost::serialization::version< AbstractCardiacTissue< ELEMENT_DIM, SPACE_DIM > >
• Box< DIM >
• BoxCollection< DIM >
• CardiacElectroMechanicsProblem< DIM >
  • CardiacElectroMechProbRegularGeom< DIM >
• CardiacNewtonSolver< SIZE >
• CardiacSimulation
• CardiacSimulationArchiver< PROBLEM_CLASS >
• CellBasedSimulationArchiver< DIM, SIM >
• CellCycleModelOdeHandler
  • AbstractOdeBasedCellCycleModel
  • SingleOdeWntCellCycleModel
• CellMLToSharedLibraryConverter
• CellProperties
• CellPropertyCollection
• CellPropertyRegistry
• CellsGenerator< CELL_CYCLE_MODEL, DIM >
• CellsGenerator< CELL_CYCLE_MODEL, 2 >
  • CryptCellsGenerator< CELL_CYCLE_MODEL >
• CellwiseData< DIM >
• CellwiseDataGradient< DIM >
• ChasteBuildInfo
• ChastePoint< DIM >
• ChastePoint< 0 >
• CombinedOdeSystem::VariableParameterMap
• CombinedOdeSystemInformation::InstancePointers
• CommandLineArguments
• ContractionModelInputParameters_
• CryptSimulationArchiver< DIM, SIM >
• CuboidMeshConstructor< ELEMENT_DIM, SPACE_DIM >
• CvodeData_
• GlobalFixture
  • PetscSetup
• TestSuite
  • AbstractCellBasedTestSuite
• DataWriterVariable
• DiscreteSystemForceCalculator
• DistanceMapCalculator< ELEMENT_DIM, SPACE_DIM >
• DistributedVector
• DistributedVector::Chunk
• DistributedVector::Iterator
• DistributedVector::Stripe
• DistributedVectorException
• DistributedVectorFactory
• DynamicCellModelLoader
• DynamicModelLoaderRegistry
• Electrodes< DIM >
• ElementAndWeights< DIM >
• ElementData
• Exception
• ExecutableSupport
• FibreReader< DIM >
• FileFinder
  • HeartFileFinder
• FineCoarseMeshPair< DIM >
• FourthOrderTensor< DIM1, DIM2, DIM3, DIM4 >
• GaussianQuadratureRule< ELEMENT_DIM >
• GaussianQuadratureRule< ELEMENT_DIM-1 >
• GenericEventHandler< NUM_EVENTS, CONCRETE >
• GenericEventHandler< 13, HeartEventHandler >
  • HeartEventHandler
• GenericEventHandler< 7, MechanicsEventHandler >
  • MechanicsEventHandler
• GenericEventHandler< 9, CellBasedEventHandler >
  • CellBasedEventHandler
• Hdf5DataReader
• Hdf5DataWriter
• HeartConfig
• HeartGeometryInformation< SPACE_DIM >
• HeartGeometryInformation< ELEMENT_DIM >
• HeartRegionCode
• HoneycombMeshGenerator
• HoneycombVertexMeshGenerator
  • CylindricalHoneycombVertexMeshGenerator
  • HoneycombMutableVertexMeshGenerator
• Identifiable
  • AbstractCellKiller< SPACE_DIM >
    • OxygenBasedCellKiller< SPACE_DIM >
  • AbstractCellKiller< 2 >
    • RadialSloughingCellKiller
  • AbstractCellKiller< DIM >
    • RandomCellKiller< DIM >
    • SloughingCellKiller< DIM >
    • TargetedCellKiller< DIM >
  • AbstractCellPopulation< DIM >
    • AbstractCentreBasedCellPopulation< DIM >
      • MeshBasedCellPopulation< DIM >
        • MeshBasedCellPopulationWithGhostNodes< DIM >
      • NodeBasedCellPopulation< DIM >
    • VertexBasedCellPopulation< DIM >
  • AbstractCellPopulation< SPACE_DIM >
  • AbstractCellProperty
    • AbstractCellMutationState
      • ApcOneHitCellMutationState
      • ApcTwoHitCellMutationState
      • BetaCateninOneHitCellMutationState
      • WildTypeCellMutationState
    • ApoptoticCellProperty
    • CellLabel
  • AbstractForce< DIM >
    • AbstractTwoBodyInteractionForce< DIM >
      • GeneralisedLinearSpringForce< DIM >
        • LinearSpringWithVariableSpringConstantsForce< DIM >
      • GeneralisedLinearSpringForce< 2 >
        • CryptProjectionForce
    • ChemotacticForce< DIM >
    • NagaiHondaForce< DIM >
    • VertexCryptBoundaryForce< DIM >
    • WelikyOsterForce< DIM >
  • CellBasedSimulation< DIM >
    • CellBasedSimulationWithPdes< DIM >
  • CellBasedSimulation< 1 >
    • CryptSimulation1d
  • CellBasedSimulation< 2 >
    • CryptSimulation2d
    • VertexCryptSimulation2d
• LessThanNode< SPACE_DIM >
• LinearBasisFunction< ELEMENT_DIM >
• LinearBasisFunction< 0 >
• LinearSystem
• LogFile
• MeshBasedCellPopulation< DIM >::SpringIterator
• MeshWriterIterators< ELEMENT_DIM, SPACE_DIM >
• Node< SPACE_DIM >
• Node< SPACE_DIM >::ContainingBoundaryElementIterator
• Node< SPACE_DIM >::ContainingElementIterator
• NodeMap
• NonlinearElasticityTools< DIM >
• null_deleter
• NumericFileComparison
• OdeSolution
• OutputDirectoryFifoQueue
• OutputFileHandler
• pack< void(T)>
• PapillaryFibreCalculator
• PCBlockDiagonal
• PCBlockDiagonal::PCBlockDiagonalContext
• PCLDUFactorisation
• PCLDUFactorisation::PCLDUFactorisationContext
• PCTwoLevelsBlockDiagonal
• PCTwoLevelsBlockDiagonal::PCTwoLevelsBlockDiagonalContext
• PdeAndBoundaryConditions< DIM >
• PdeSimulationTime
• PetscTools
• PostProcessingWriter< ELEMENT_DIM, SPACE_DIM >
• ProcessSpecificArchive< Archive >
• ProgressReporter
• PropagationPropertiesCalculator
• QuadraticBasisFunction< ELEMENT_DIM >
• QuadraticBasisFunction< 0 >
• QuadraturePointsGroup< DIM >
• RandomNumberGenerator
• RelativeTo
• ReplicatableVector
• SimpleDataWriter
• SimulationTime
• StreeterFibreGenerator< SPACE_DIM >
• TetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::EdgeIterator
• Timer
• TimeStepper
• VertexElementData
• VertexElementMap
• VertexMesh< ELEMENT_DIM, SPACE_DIM >::VertexElementIterator
• VoltageInterpolaterOntoMechanicsMesh< DIM >
• Warnings
• WntConcentration< DIM >
• XmlTools
• XmlTransforms
• CARDIAC_CELL
  • AbstractCardiacCellWithModifiers< CARDIAC_CELL >