BidomainWithBathAssembler< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <BidomainWithBathAssembler.hpp>

Inheritance diagram for BidomainWithBathAssembler< ELEMENT_DIM, SPACE_DIM >:

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Collaboration diagram for BidomainWithBathAssembler< ELEMENT_DIM, SPACE_DIM >:

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List of all members.

Public Member Functions
	BidomainWithBathAssembler (AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, BidomainTissue< SPACE_DIM > *pTissue, double dt, unsigned numQuadPoints=2)
	~BidomainWithBathAssembler ()
Protected Member Functions
virtual c_matrix< double, 2 *(ELEMENT_DIM+1), 2 *(ELEMENT_DIM+1)>	ComputeMatrixTerm (c_vector< double, ELEMENT_DIM+1 > &rPhi, c_matrix< double, SPACE_DIM, ELEMENT_DIM+1 > &rGradPhi, ChastePoint< SPACE_DIM > &rX, c_vector< double, 2 > &rU, c_matrix< double, 2, SPACE_DIM > &rGradU, Element< ELEMENT_DIM, SPACE_DIM > *pElement)
virtual c_vector< double, 2 *(ELEMENT_DIM+1)>	ComputeVectorTerm (c_vector< double, ELEMENT_DIM+1 > &rPhi, c_matrix< double, SPACE_DIM, ELEMENT_DIM+1 > &rGradPhi, ChastePoint< SPACE_DIM > &rX, c_vector< double, 2 > &u, c_matrix< double, 2, SPACE_DIM > &rGradU, Element< ELEMENT_DIM, SPACE_DIM > *pElement)

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Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class BidomainWithBathAssembler< ELEMENT_DIM, SPACE_DIM >

Assembler for assembling the LHS matrix and RHS vector of the linear systems solved in bidomain problems with a perfusing bath

Definition at line 41 of file BidomainWithBathAssembler.hpp.

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Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

BidomainWithBathAssembler< ELEMENT_DIM, SPACE_DIM >::BidomainWithBathAssembler	(	AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *	pMesh,
		BidomainTissue< SPACE_DIM > *	pTissue,
		double	dt,
		unsigned	numQuadPoints = 2
	)			[inline]

Constructor.

Parameters:

	pMesh	pointer to the mesh
	pTissue	pointer to the tissue
	dt	timestep
	numQuadPoints	number of quadrature points (defaults to 2)

Definition at line 91 of file BidomainWithBathAssembler.hpp.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

BidomainWithBathAssembler< ELEMENT_DIM, SPACE_DIM >::~BidomainWithBathAssembler

(

)

[inline]

Destructor.

Definition at line 102 of file BidomainWithBathAssembler.hpp.

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Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

c_matrix< double, 2 *(ELEMENT_DIM+1), 2 *(ELEMENT_DIM+1)> BidomainWithBathAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeMatrixTerm	(	c_vector< double, ELEMENT_DIM+1 > &	rPhi,
		c_matrix< double, SPACE_DIM, ELEMENT_DIM+1 > &	rGradPhi,
		ChastePoint< SPACE_DIM > &	rX,
		c_vector< double, 2 > &	rU,
		c_matrix< double, 2, SPACE_DIM > &	rGradU,
		Element< ELEMENT_DIM, SPACE_DIM > *	pElement
	)			[inline, protected, virtual]

Overloaded ComputeMatrixTerm() - calls the base class version for tissue elements.

Parameters:

	rPhi	The basis functions, rPhi(i) = phi_i, i=1..numBases
	rGradPhi	Basis gradients, rGradPhi(i,j) = d(phi_j)/d(X_i)
	rX	The point in space
	rU	The unknown as a vector, u(i) = u_i
	rGradU	The gradient of the unknown as a matrix, rGradU(i,j) = d(u_i)/d(X_j)
	pElement	Pointer to the element

Reimplemented from BidomainAssembler< ELEMENT_DIM, SPACE_DIM >.

Definition at line 34 of file BidomainWithBathAssembler.cpp.

References HeartRegionCode::BATH, BidomainAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeMatrixTerm(), HeartConfig::GetBathConductivity(), AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetRegion(), and HeartConfig::Instance().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

c_vector< double, 2 *(ELEMENT_DIM+1)> BidomainWithBathAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeVectorTerm	(	c_vector< double, ELEMENT_DIM+1 > &	rPhi,
		c_matrix< double, SPACE_DIM, ELEMENT_DIM+1 > &	rGradPhi,
		ChastePoint< SPACE_DIM > &	rX,
		c_vector< double, 2 > &	u,
		c_matrix< double, 2, SPACE_DIM > &	rGradU,
		Element< ELEMENT_DIM, SPACE_DIM > *	pElement
	)			[inline, protected, virtual]

Overloaded ComputeVectorTerm() - calls the base class version for tissue elements, otherwise returns zero.

Parameters:

	rPhi	The basis functions, rPhi(i) = phi_i, i=1..numBases
	rGradPhi	Basis gradients, rGradPhi(i,j) = d(phi_j)/d(X_i)
	rX	The point in space
	u	The unknown as a vector, u(i) = u_i
	rGradU	The gradient of the unknown as a matrix, rGradU(i,j) = d(u_i)/d(X_j)
	pElement	Pointer to the element

Reimplemented from BidomainAssembler< ELEMENT_DIM, SPACE_DIM >.

Definition at line 82 of file BidomainWithBathAssembler.cpp.

References HeartRegionCode::BATH, BidomainAssembler< ELEMENT_DIM, SPACE_DIM >::ComputeVectorTerm(), and AbstractElement< ELEMENT_DIM, SPACE_DIM >::GetRegion().

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The documentation for this class was generated from the following files:

• heart/src/solver/electrics/BidomainWithBathAssembler.hpp
• heart/src/solver/electrics/BidomainWithBathAssembler.cpp