ExecutableSupport Class Reference

#include <ExecutableSupport.hpp>

Collaboration diagram for ExecutableSupport:

List of all members.

Static Public Member Functions

static void InitializePetsc (int *pArgc, char ***pArgv)

static void ShowCopyright ()

static void ShowParallelLaunching ()

static void SetOutputDirectory (const std::string &rOutputDirectory)

static void WriteMachineInfoFile (std::string fileBaseName)

static void WriteProvenanceInfoFile ()

static void WriteLibraryInfo (out_stream &outFile)

static void StandardStartup (int *pArgc, char ***pArgv)

static void PrintError (const std::string &rMessage, bool masterOnly=false)

static void FinalizePetsc ()

Static Public Attributes

static const int EXIT_OK = 0

static const int EXIT_ERROR = 1

static const int EXIT_BAD_ARGUMENTS = 2

Static Private Attributes

static std::string mOutputDirectory

Detailed Description

Various helpful static methods for people writing their own executables within the Chaste framework.

Most executables will just need to call StandardStartup as the first thing in their main() function, and FinalizePetsc before quitting. The other methods allow you to fine-tune what output is presented to users.

Definition at line 44 of file ExecutableSupport.hpp.

Member Function Documentation

void ExecutableSupport::InitializePetsc	(	int *	pArgc,
		char ***	pArgv
	)			`[static]`

Initialise PETSc from the command line arguments.

Parameters:

	pArgc	pointer to the number of arguments
	pArgv	pointer to the argument list

Definition at line 61 of file ExecutableSupport.cpp.

References CommandLineArguments::Instance(), CommandLineArguments::p_argc, and CommandLineArguments::p_argv.

Referenced by StandardStartup().

void ExecutableSupport::ShowCopyright ( ) [static]

Display Chaste's copyright information.

Definition at line 70 of file ExecutableSupport.cpp.

References PetscTools::AmMaster(), ChasteBuildInfo::GetBuilderUnameInfo(), ChasteBuildInfo::GetBuildInformation(), ChasteBuildInfo::GetBuildTime(), and ChasteBuildInfo::GetRevisionNumber().

Referenced by StandardStartup().

void ExecutableSupport::ShowParallelLaunching ( ) [static]

Output extra diagnostics when Chaste is launched in parallel.

Information to show that Chaste is being run in parallel

Definition at line 101 of file ExecutableSupport.cpp.

References PetscTools::Barrier(), PetscTools::GetMyRank(), PetscTools::GetNumProcs(), and PetscTools::IsSequential().

Referenced by StandardStartup().

void ExecutableSupport::SetOutputDirectory ( const std::string & rOutputDirectory ) [static]

Set the directory to which the files created by WriteMachineInfoFile, and WriteProvenanceInfoFile will be written. By default they will write to the CHASTE_TEST_OUTPUT folder.

Parameters:

rOutputDirectory

the directory to write to

Definition at line 56 of file ExecutableSupport.cpp.

References mOutputDirectory.

Referenced by CardiacSimulation::CardiacSimulation().

void ExecutableSupport::WriteMachineInfoFile ( std::string fileBaseName ) [static]

Write to log files information about the machine that ran the code. Each process will output its own file.

Parameters:

fileBaseName

base name of the file to write to

Definition at line 118 of file ExecutableSupport.cpp.

References PetscTools::GetMyRank(), PetscTools::GetNumProcs(), mOutputDirectory, and OutputFileHandler::OpenOutputFile().

Referenced by CardiacSimulation::CardiacSimulation(), and CellBasedSimulation< DIM >::OutputSimulationSetup().

void ExecutableSupport::WriteProvenanceInfoFile ( ) [static]

Write to log files provenance information about this executable. Each process will output its own file, named provenance_info.n.txt.

Definition at line 165 of file ExecutableSupport.cpp.

References ChasteBuildInfo::GetBuilderUnameInfo(), ChasteBuildInfo::GetBuildInformation(), ChasteBuildInfo::GetBuildTime(), PetscTools::GetMyRank(), ChasteBuildInfo::GetRevisionNumber(), mOutputDirectory, OutputFileHandler::OpenOutputFile(), and WriteLibraryInfo().

Referenced by CardiacSimulation::CardiacSimulation().

void ExecutableSupport::WriteLibraryInfo ( out_stream & outFile ) [static]

Write information about library and compiler versions to the provenance_info.txt output file.

Parameters:

outFile

the provenance_info.txt file.

Definition at line 182 of file ExecutableSupport.cpp.

References ChasteBuildInfo::GetCompilerFlags(), ChasteBuildInfo::GetCompilerType(), ChasteBuildInfo::GetCompilerVersion(), and ChasteBuildInfo::GetXsdVersion().

Referenced by CellBasedSimulation< DIM >::OutputSimulationSetup(), and WriteProvenanceInfoFile().

void ExecutableSupport::StandardStartup	(	int *	pArgc,
		char ***	pArgv
	)			`[static]`

Call InitializePetsc, ShowCopyright, then ShowParallelLaunching.

Parameters:

	pArgc	pointer to the number of arguments
	pArgv	pointer to the argument list

Definition at line 222 of file ExecutableSupport.cpp.

References InitializePetsc(), ShowCopyright(), and ShowParallelLaunching().

void ExecutableSupport::PrintError	(	const std::string &	rMessage,
		bool	masterOnly = `false`
	)			`[static]`

Display an error message to the user, on stderr.

Parameters:

	rMessage	the message to display
	masterOnly	whether only the master process should display the error

Definition at line 229 of file ExecutableSupport.cpp.

References PetscTools::AmMaster(), PetscTools::GetMyRank(), mOutputDirectory, and OutputFileHandler::OpenOutputFile().

void ExecutableSupport::FinalizePetsc ( ) [static]

Shut down PETSc so we exit cleanly.

Definition at line 244 of file ExecutableSupport.cpp.

Member Data Documentation

const int ExecutableSupport::EXIT_OK = 0 [static]

Standard exit codes for executables to return from main(): successful termination.

Definition at line 121 of file ExecutableSupport.hpp.

const int ExecutableSupport::EXIT_ERROR = 1 [static]

Standard exit codes for executables to return from main(): exception thrown during execution.

Definition at line 127 of file ExecutableSupport.hpp.

const int ExecutableSupport::EXIT_BAD_ARGUMENTS = 2 [static]

Standard exit codes for executables to return from main(): bad arguments passed on command line.

Definition at line 133 of file ExecutableSupport.hpp.

std::string ExecutableSupport::mOutputDirectory [static, private]

The output directory to put machine provenance information into

Definition at line 137 of file ExecutableSupport.hpp.

Referenced by PrintError(), SetOutputDirectory(), WriteMachineInfoFile(), and WriteProvenanceInfoFile().

The documentation for this class was generated from the following files:

global/src/ExecutableSupport.hpp
global/src/ExecutableSupport.cpp


Static Public Member Functions
static void	InitializePetsc (int pArgc, char **pArgv)
static void	ShowCopyright ()
static void	ShowParallelLaunching ()
static void	SetOutputDirectory (const std::string &rOutputDirectory)
static void	WriteMachineInfoFile (std::string fileBaseName)
static void	WriteProvenanceInfoFile ()
static void	WriteLibraryInfo (out_stream &outFile)
static void	StandardStartup (int pArgc, char **pArgv)
static void	PrintError (const std::string &rMessage, bool masterOnly=false)
static void	FinalizePetsc ()
Static Public Attributes
static const int	EXIT_OK = 0
static const int	EXIT_ERROR = 1
static const int	EXIT_BAD_ARGUMENTS = 2
Static Private Attributes
static std::string	mOutputDirectory