CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER > Class Template Reference

#include <CellCycleModelOdeSolver.hpp>

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Collaboration diagram for CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >:

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List of all members.

Public Member Functions

bool IsSetUp ()
void Initialise ()
virtual bool IsAdaptive ()

Static Public Member Functions

static boost::shared_ptr
< CellCycleModelOdeSolver
< CELL_CYCLE_MODEL, ODE_SOLVER > > 
Instance ()

Private Member Functions

 CellCycleModelOdeSolver ()
template<class Archive>
void serialize (Archive &archive, const unsigned int version)

Static Private Attributes

static boost::shared_ptr
< CellCycleModelOdeSolver
< CELL_CYCLE_MODEL, ODE_SOLVER > > 
mpInstance

Friends

class boost::serialization::access


Detailed Description

template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
class CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >

A concrete implementation of AbstractCellCycleModelOdeSolver, that uses templates to provide an implementation for any pair of cell cycle model and ODE solver classes.

All ODE-based cell cycle model developers need to do is set mpOdeSolver in their constructor: mpOdeSolver = CellCycleModelOdeSolver<CELL_CYCLE_MODEL, ODE_SOLVER>::Instance();

This class contains all the machinery to make it a singleton, hence providing exactly one instance per pair of values of the template parameters.

Definition at line 50 of file CellCycleModelOdeSolver.hpp.


Constructor & Destructor Documentation

template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::CellCycleModelOdeSolver (  )  [inline, private]

Default constructor. Not user accessible; to obtain an instance of this class use the Instance method.

The semantics of shared_ptr are different from normal pointers; we don't care if a second instance is constructed when loading an archive, since archiving the shared_ptr will ensure that the 'singleton' is correctly serialized. Thus, here we do not require an assertion that mpInstance is NULL, as we do in the constructors of the SimulationTime singleton class.

Definition at line 100 of file CellCycleModelOdeSolver.hpp.


Member Function Documentation

template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
template<class Archive>
void CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::serialize ( Archive &  archive,
const unsigned int  version 
) [inline, private]

Archive the cell cycle model, never used directly - boost uses this.

Parameters:
archive the archive
version the current version of this class

Reimplemented from AbstractCellCycleModelOdeSolver.

Definition at line 68 of file CellCycleModelOdeSolver.hpp.

References CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::mpInstance.

template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
boost::shared_ptr< CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER > > CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::Instance (  )  [inline, static]

template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
bool CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::IsSetUp (  )  [inline, virtual]

Is the instance in existence and fully set up.

Implements AbstractCellCycleModelOdeSolver.

Definition at line 123 of file CellCycleModelOdeSolver.hpp.

References AbstractCellCycleModelOdeSolver::mpOdeSolver.

template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
void CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::Initialise ( void   )  [inline, virtual]

Initialise the ODE solver.

Implements AbstractCellCycleModelOdeSolver.

Definition at line 129 of file CellCycleModelOdeSolver.hpp.

References AbstractCellCycleModelOdeSolver::mpOdeSolver.

template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
bool CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::IsAdaptive (  )  [inline, virtual]

Return true iff this is an adaptive solver such as CVODE for which it is safe to set the 'timestep' to be the outer simulation timestep, because the ODE solver will use this as its maximum, not actual, timestep.

By default calls the base class version; it is defined here so that specializations can override it.

Reimplemented from AbstractCellCycleModelOdeSolver.

Definition at line 135 of file CellCycleModelOdeSolver.hpp.

References AbstractCellCycleModelOdeSolver::IsAdaptive().


Friends And Related Function Documentation

template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented from AbstractCellCycleModelOdeSolver.

Definition at line 60 of file CellCycleModelOdeSolver.hpp.


Member Data Documentation

template<class CELL_CYCLE_MODEL, class ODE_SOLVER>
boost::shared_ptr< CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER > > CellCycleModelOdeSolver< CELL_CYCLE_MODEL, ODE_SOLVER >::mpInstance [inline, static, private]


The documentation for this class was generated from the following file:

Generated on Mon Nov 1 12:36:21 2010 for Chaste by  doxygen 1.5.5