StochasticDurationGenerationBasedCellCycleModel Class Reference
#include <StochasticDurationGenerationBasedCellCycleModel.hpp>
Inherits AbstractSimpleGenerationBasedCellCycleModel.
Inherited by DeltaNotchCellCycleModel.
Public Member Functions | |
| StochasticDurationGenerationBasedCellCycleModel () | |
| AbstractCellCycleModel * | CreateCellCycleModel () |
| virtual void | OutputCellCycleModelParameters (out_stream &rParamsFile) |
Private Member Functions | |
| template<class Archive > | |
| void | serialize (Archive &archive, const unsigned int version) |
| void | SetG1Duration () |
Friends | |
| class | TestSimpleCellCycleModels |
| class | boost::serialization::access |
Detailed Description
A stochastic cell-cycle model employed by Meineke et al (2001) in their off-lattice model of the intestinal crypt (doi:10.1046/j.0960-7722.2001.00216.x).
Definition at line 39 of file StochasticDurationGenerationBasedCellCycleModel.hpp.
Constructor & Destructor Documentation
| StochasticDurationGenerationBasedCellCycleModel::StochasticDurationGenerationBasedCellCycleModel | ( | ) |
Constructor - just a default, mBirthTime is now set in the AbstractCellCycleModel class. mG1Duration is set very high, it is set for the individual cells when InitialiseDaughterCell is called
Definition at line 32 of file StochasticDurationGenerationBasedCellCycleModel.cpp.
Referenced by CreateCellCycleModel().
Member Function Documentation
| AbstractCellCycleModel * StochasticDurationGenerationBasedCellCycleModel::CreateCellCycleModel | ( | ) | [virtual] |
Overridden builder method to create new copies of this cell-cycle model.
Implements AbstractCellCycleModel.
Reimplemented in DeltaNotchCellCycleModel.
Definition at line 36 of file StochasticDurationGenerationBasedCellCycleModel.cpp.
References AbstractCellCycleModel::mBirthTime, AbstractCellCycleModel::mCellProliferativeType, AbstractCellCycleModel::mG2Duration, AbstractSimpleGenerationBasedCellCycleModel::mGeneration, AbstractSimpleGenerationBasedCellCycleModel::mMaxTransitGenerations, AbstractCellCycleModel::mMDuration, AbstractCellCycleModel::mMinimumGapDuration, AbstractCellCycleModel::mSDuration, AbstractCellCycleModel::mStemCellG1Duration, AbstractCellCycleModel::mTransitCellG1Duration, AbstractCellCycleModel::SetBirthTime(), AbstractCellCycleModel::SetCellProliferativeType(), AbstractCellCycleModel::SetG2Duration(), AbstractSimpleGenerationBasedCellCycleModel::SetGeneration(), AbstractSimpleGenerationBasedCellCycleModel::SetMaxTransitGenerations(), AbstractCellCycleModel::SetMDuration(), AbstractCellCycleModel::SetMinimumGapDuration(), AbstractCellCycleModel::SetSDuration(), AbstractCellCycleModel::SetStemCellG1Duration(), AbstractCellCycleModel::SetTransitCellG1Duration(), and StochasticDurationGenerationBasedCellCycleModel().
| void StochasticDurationGenerationBasedCellCycleModel::OutputCellCycleModelParameters | ( | out_stream & | rParamsFile | ) | [virtual] |
Outputs cell cycle model parameters to file.
- Parameters:
-
rParamsFile the file stream to which the parameters are output
Reimplemented from AbstractSimpleGenerationBasedCellCycleModel.
Reimplemented in DeltaNotchCellCycleModel.
Definition at line 92 of file StochasticDurationGenerationBasedCellCycleModel.cpp.
| void StochasticDurationGenerationBasedCellCycleModel::serialize | ( | Archive & | archive, | |
| const unsigned int | version | |||
| ) | [inline, private] |
Archive the cell-cycle model and random number generator, never used directly - boost uses this.
- Parameters:
-
archive the archive version the current version of this class
Reimplemented from AbstractSimpleGenerationBasedCellCycleModel.
Reimplemented in DeltaNotchCellCycleModel.
Definition at line 54 of file StochasticDurationGenerationBasedCellCycleModel.hpp.
References SerializableSingleton< SINGLETON_CLASS >::GetSerializationWrapper(), and RandomNumberGenerator::Instance().
| void StochasticDurationGenerationBasedCellCycleModel::SetG1Duration | ( | ) | [private, virtual] |
Stochastically set the G1 duration. Called on cell creation at the start of a simulation, and for both parent and daughter cells at cell division.
Reimplemented from AbstractSimpleCellCycleModel.
Definition at line 72 of file StochasticDurationGenerationBasedCellCycleModel.cpp.
References AbstractCellCycleModel::GetStemCellG1Duration(), AbstractCellCycleModel::GetTransitCellG1Duration(), RandomNumberGenerator::Instance(), AbstractCellCycleModel::mCellProliferativeType, AbstractCellCycleModel::mG1Duration, NEVER_REACHED, and RandomNumberGenerator::ranf().
Friends And Related Function Documentation
friend class boost::serialization::access [friend] |
Needed for serialization.
Reimplemented from AbstractSimpleGenerationBasedCellCycleModel.
Reimplemented in DeltaNotchCellCycleModel.
Definition at line 46 of file StochasticDurationGenerationBasedCellCycleModel.hpp.
The documentation for this class was generated from the following files:
- cell_based/src/population/cell/cycle/StochasticDurationGenerationBasedCellCycleModel.hpp
- cell_based/src/population/cell/cycle/StochasticDurationGenerationBasedCellCycleModel.cpp
