StochasticDurationCellCycleModel Class Reference

#include <StochasticDurationCellCycleModel.hpp>

Inherits AbstractSimpleCellCycleModel.

Collaboration diagram for StochasticDurationCellCycleModel:

[legend]

List of all members.

Public Member Functions
	StochasticDurationCellCycleModel ()
void	SetG1Duration ()
AbstractCellCycleModel *	CreateCellCycleModel ()
virtual void	OutputCellCycleModelParameters (out_stream &rParamsFile)
Private Member Functions
template<class Archive >
void	serialize (Archive &archive, const unsigned int version)
Friends
class	TestSimpleCellCycleModels
class	boost::serialization::access

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Detailed Description

A stochastic cell-cycle model where Cells keep dividing with a stochastic cell cycle duration.

Definition at line 38 of file StochasticDurationCellCycleModel.hpp.

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Constructor & Destructor Documentation

StochasticDurationCellCycleModel::StochasticDurationCellCycleModel

(

)

Constructor - just a default, mBirthTime is now set in the AbstractCellCycleModel class. mG1Duration is set very high, it is set for the individual cells when InitialiseDaughterCell is called

Definition at line 32 of file StochasticDurationCellCycleModel.cpp.

Referenced by CreateCellCycleModel().

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Member Function Documentation

AbstractCellCycleModel * StochasticDurationCellCycleModel::CreateCellCycleModel

(

)

[virtual]

Overridden builder method to create new copies of this cell-cycle model.

Implements AbstractCellCycleModel.

Definition at line 37 of file StochasticDurationCellCycleModel.cpp.

References AbstractCellCycleModel::mBirthTime, AbstractCellCycleModel::mCellProliferativeType, AbstractCellCycleModel::mG2Duration, AbstractCellCycleModel::mMDuration, AbstractCellCycleModel::mMinimumGapDuration, AbstractCellCycleModel::mSDuration, AbstractCellCycleModel::mStemCellG1Duration, AbstractCellCycleModel::mTransitCellG1Duration, AbstractCellCycleModel::SetBirthTime(), AbstractCellCycleModel::SetCellProliferativeType(), AbstractCellCycleModel::SetG2Duration(), AbstractCellCycleModel::SetMDuration(), AbstractCellCycleModel::SetMinimumGapDuration(), AbstractCellCycleModel::SetSDuration(), AbstractCellCycleModel::SetStemCellG1Duration(), AbstractCellCycleModel::SetTransitCellG1Duration(), and StochasticDurationCellCycleModel().

void StochasticDurationCellCycleModel::OutputCellCycleModelParameters

(

out_stream &

rParamsFile

)

[virtual]

Outputs cell cycle model parameters to file.

Parameters:

rParamsFile

the file stream to which the parameters are output

Reimplemented from AbstractSimpleCellCycleModel.

Definition at line 92 of file StochasticDurationCellCycleModel.cpp.

template<class Archive >

void StochasticDurationCellCycleModel::serialize	(	Archive &	archive,
		const unsigned int	version
	)			[inline, private]

Archive the cell-cycle model and random number generator, never used directly - boost uses this.

Parameters:

	archive	the archive
	version	the current version of this class

Reimplemented from AbstractSimpleCellCycleModel.

Definition at line 53 of file StochasticDurationCellCycleModel.hpp.

References SerializableSingleton< SINGLETON_CLASS >::GetSerializationWrapper(), and RandomNumberGenerator::Instance().

void StochasticDurationCellCycleModel::SetG1Duration

(

)

[virtual]

Overridden SetG1Duration Method to add stochastic cell cycle times

Reimplemented from AbstractSimpleCellCycleModel.

Definition at line 71 of file StochasticDurationCellCycleModel.cpp.

References AbstractCellCycleModel::GetStemCellG1Duration(), AbstractCellCycleModel::GetTransitCellG1Duration(), RandomNumberGenerator::Instance(), AbstractCellCycleModel::mCellProliferativeType, AbstractCellCycleModel::mG1Duration, NEVER_REACHED, and RandomNumberGenerator::ranf().

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Friends And Related Function Documentation

friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented from AbstractSimpleCellCycleModel.

Definition at line 45 of file StochasticDurationCellCycleModel.hpp.

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The documentation for this class was generated from the following files:

• cell_based/src/population/cell/cycle/StochasticDurationCellCycleModel.hpp
• cell_based/src/population/cell/cycle/StochasticDurationCellCycleModel.cpp