Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM > Class Template Reference
#include <Hdf5ToMeshalyzerConverter.hpp>
Inherits AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >.
Public Member Functions | |
| Hdf5ToMeshalyzerConverter (std::string inputDirectory, std::string fileBaseName, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, bool usingOriginalNodeOrdering) | |
Private Member Functions | |
| void | Write (std::string type) |
Detailed Description
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >
This class converts from Hdf5 format to meshalyzer format, ie, for voltage, one file, which looks like
V_node_0_time_0 .. V_node_N_time_0 V_node_0_time_1 .. V_node_N_time_1 V_node_0_time_2 .. V_node_N_time_M
The files that are written are [base_name]_V.dat or [base_name]_Phi_e.dat, where [base_name] is the base name of the original .h5 file. The new files are written in the same directory as the .h5 file. All paths are relative to the CHASTE_TEST_OUTPUT directory.
Definition at line 54 of file Hdf5ToMeshalyzerConverter.hpp.
Constructor & Destructor Documentation
| Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToMeshalyzerConverter | ( | std::string | inputDirectory, | |
| std::string | fileBaseName, | |||
| AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > * | pMesh, | |||
| bool | usingOriginalNodeOrdering | |||
| ) | [inline] |
Constructor, which does the conversion.
- Note:
- This method is collective, and hence must be called by all processes.
- Parameters:
-
inputDirectory The input directory, relative to CHASTE_TEST_OUTPUT, where the .h5 file has been written fileBaseName The base name of the data file. pMesh Pointer to the mesh. usingOriginalNodeOrdering Whether HDF5 output was written using the original node ordering
- Todo:
- What if the mesh has been scaled, translated or rotated?
Definition at line 89 of file Hdf5ToMeshalyzerConverter.cpp.
References PetscTools::Barrier(), Hdf5DataReader::GetVariableNames(), AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpMesh, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpReader, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mRelativeSubdirectory, Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >::Write(), AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMesh(), and AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMeshReader().
Member Function Documentation
| void Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >::Write | ( | std::string | type | ) | [inline, private] |
A helper method which takes in a string, which must be 'V' or 'Phi_e' and reads the data corresponding to that string, writing it out in meshalyzer format.
- Parameters:
-
type the type of data stored in this file (V/Phi_e)
Definition at line 42 of file Hdf5ToMeshalyzerConverter.cpp.
References PetscTools::AmMaster(), DistributedVectorFactory::CreateVec(), Hdf5DataReader::GetNumberOfRows(), ChasteBuildInfo::GetProvenanceString(), ReplicatableVector::GetSize(), Hdf5DataReader::GetUnlimitedDimensionValues(), Hdf5DataReader::GetVariableOverNodes(), HeartConfig::GetVisualizerOutputPrecision(), HeartConfig::Instance(), AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mFileBaseName, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpOutputFileHandler, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpReader, OutputFileHandler::OpenOutputFile(), and ReplicatableVector::ReplicatePetscVector().
Referenced by Hdf5ToMeshalyzerConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToMeshalyzerConverter().
The documentation for this class was generated from the following files:
- heart/src/postprocessing/Hdf5ToMeshalyzerConverter.hpp
- heart/src/postprocessing/Hdf5ToMeshalyzerConverter.cpp
