TrapezoidEdgeVertexMeshWriter.hpp

/*
 
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This file is part of Chaste.
 
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 * Redistributions of source code must retain the above copyright notice,
   this list of conditions and the following disclaimer.
 * Redistributions in binary form must reproduce the above copyright notice,
   this list of conditions and the following disclaimer in the documentation
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   software without specific prior written permission.
 
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AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
 
*/
#ifndef TRAPEZOIDEDGEVERTEXMESHWRITER_HPP_
#define TRAPEZOIDEDGEVERTEXMESHWRITER_HPP_
 
// Forward declaration prevents circular include chain
template <unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class VertexMesh;
 
#ifdef CHASTE_VTK
// Requires  "sudo aptitude install libvtk5-dev" or similar
#define _BACKWARD_BACKWARD_WARNING_H 1 // Cut out the strstream deprecated warning for now (gcc4.3)
#include <vtkCellData.h>
#include <vtkConvexPointSet.h>
#include <vtkDataCompressor.h>
#include <vtkDoubleArray.h>
#include <vtkHexahedron.h>
#include <vtkPointData.h>
#include <vtkPolygon.h>
#include <vtkQuad.h>
#include <vtkUnstructuredGrid.h>
#include <vtkUnstructuredGridWriter.h>
#include <vtkXMLUnstructuredGridWriter.h>
#endif // CHASTE_VTK
 
#include "AbstractMeshWriter.hpp"
#include "NodeMap.hpp"
#include "VertexMesh.hpp"
 
// Forward declaration prevents circular include chain
template <unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class VertexMesh;
 
template <unsigned ELEMENT_DIM, unsigned SPACE_DIM>
struct MeshWriterIterators;
 
template <unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class TrapezoidEdgeVertexMeshWriter : public AbstractMeshWriter<ELEMENT_DIM, SPACE_DIM>
{
private:
    VertexMesh<ELEMENT_DIM, SPACE_DIM>* mpMesh = nullptr;
 
#ifdef CHASTE_VTK
    // Requires  "sudo apt install libvtk7-dev" or similar
    vtkUnstructuredGrid* mpVtkUnstructedMesh = nullptr;
#endif // CHASTE_VTK
 
public:
    TrapezoidEdgeVertexMeshWriter(const std::string& rDirectory,
                                  const std::string& rBaseName,
                                  const bool clearOutputDir = true);
 
    void WriteVtkUsingMesh(VertexMesh<ELEMENT_DIM, SPACE_DIM>& rMesh, const std::string& stamp = "");
 
    void MakeVtkMesh(VertexMesh<ELEMENT_DIM, SPACE_DIM>& rMesh);
 
    void AddCellData(std::string dataName, std::vector<double> dataPayload);
 
    ~TrapezoidEdgeVertexMeshWriter();
 
    void WriteFiles();
};
 
#endif /*TRAPEZOIDEDGEVERTEXMESHWRITER_HPP_*/