StochasticOxygenBasedCellCycleModel Class Reference

#include <StochasticOxygenBasedCellCycleModel.hpp>

Inheritance diagram for StochasticOxygenBasedCellCycleModel:

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List of all members.

Public Member Functions

 StochasticOxygenBasedCellCycleModel ()
void InitialiseDaughterCell ()
void Initialise ()
void ResetForDivision ()
double GetG2Duration ()
AbstractCellCycleModelCreateCellCycleModel ()
virtual void OutputCellCycleModelParameters (out_stream &rParamsFile)

Private Member Functions

template<class Archive>
void serialize (Archive &archive, const unsigned int version)
void GenerateStochasticG2Duration ()

Private Attributes

double mStochasticG2Duration

Friends

class boost::serialization::access


Detailed Description

Stochastic oxygen-based cell-cycle model.

A simple oxygen-dependent cell-cycle model that inherits from SimpleOxygenBasedCellCycleModel and in addition spends a random duration in G2 phase.

Definition at line 41 of file StochasticOxygenBasedCellCycleModel.hpp.


Constructor & Destructor Documentation

StochasticOxygenBasedCellCycleModel::StochasticOxygenBasedCellCycleModel (  ) 

Constructor.

Definition at line 32 of file StochasticOxygenBasedCellCycleModel.cpp.

Referenced by CreateCellCycleModel().


Member Function Documentation

template<class Archive>
void StochasticOxygenBasedCellCycleModel::serialize ( Archive &  archive,
const unsigned int  version 
) [inline, private]

Archive the cell-cycle model.

Parameters:
archive the archive
version the current version of this class

Reimplemented from SimpleOxygenBasedCellCycleModel.

Definition at line 47 of file StochasticOxygenBasedCellCycleModel.hpp.

References RandomNumberGenerator::Instance(), and mStochasticG2Duration.

void StochasticOxygenBasedCellCycleModel::GenerateStochasticG2Duration (  )  [private]

Stochastically set the G2 duration. Called on cell creation at the start of a simulation, and for both parent and daughter cells at cell division.

Definition at line 37 of file StochasticOxygenBasedCellCycleModel.cpp.

References AbstractCellCycleModel::GetG2Duration(), RandomNumberGenerator::Instance(), AbstractCellCycleModel::mMinimumGapDuration, mStochasticG2Duration, and RandomNumberGenerator::NormalRandomDeviate().

Referenced by Initialise(), InitialiseDaughterCell(), and ResetForDivision().

void StochasticOxygenBasedCellCycleModel::InitialiseDaughterCell (  )  [virtual]

void StochasticOxygenBasedCellCycleModel::Initialise ( void   )  [virtual]

Initialise the cell-cycle model at the start of a simulation.

Reimplemented from AbstractSimpleCellCycleModel.

Definition at line 59 of file StochasticOxygenBasedCellCycleModel.cpp.

References GenerateStochasticG2Duration(), and AbstractSimpleCellCycleModel::Initialise().

void StochasticOxygenBasedCellCycleModel::ResetForDivision (  )  [virtual]

double StochasticOxygenBasedCellCycleModel::GetG2Duration (  )  [virtual]

Returns:
mStochasticG2Duration.

Reimplemented from AbstractCellCycleModel.

Definition at line 71 of file StochasticOxygenBasedCellCycleModel.cpp.

References mStochasticG2Duration.

AbstractCellCycleModel * StochasticOxygenBasedCellCycleModel::CreateCellCycleModel (  )  [virtual]

Overridden builder method to create new copies of this cell-cycle model.

Reimplemented from SimpleOxygenBasedCellCycleModel.

Definition at line 76 of file StochasticOxygenBasedCellCycleModel.cpp.

References AbstractCellCycleModel::mBirthTime, AbstractCellCycleModel::mCellProliferativeType, SimpleOxygenBasedCellCycleModel::mCriticalHypoxicDuration, SimpleOxygenBasedCellCycleModel::mCurrentHypoxiaOnsetTime, AbstractCellCycleModel::mDimension, AbstractCellCycleModel::mG2Duration, SimpleOxygenBasedCellCycleModel::mHypoxicConcentration, AbstractCellCycleModel::mMDuration, AbstractCellCycleModel::mMinimumGapDuration, SimpleOxygenBasedCellCycleModel::mQuiescentConcentration, AbstractCellCycleModel::mSDuration, AbstractCellCycleModel::mStemCellG1Duration, AbstractCellCycleModel::mTransitCellG1Duration, AbstractCellCycleModel::SetBirthTime(), AbstractCellCycleModel::SetCellProliferativeType(), SimpleOxygenBasedCellCycleModel::SetCriticalHypoxicDuration(), SimpleOxygenBasedCellCycleModel::SetCurrentHypoxiaOnsetTime(), AbstractCellCycleModel::SetDimension(), AbstractCellCycleModel::SetG2Duration(), SimpleOxygenBasedCellCycleModel::SetHypoxicConcentration(), AbstractCellCycleModel::SetMDuration(), AbstractCellCycleModel::SetMinimumGapDuration(), SimpleOxygenBasedCellCycleModel::SetQuiescentConcentration(), AbstractCellCycleModel::SetSDuration(), AbstractCellCycleModel::SetStemCellG1Duration(), AbstractCellCycleModel::SetTransitCellG1Duration(), and StochasticOxygenBasedCellCycleModel().

void StochasticOxygenBasedCellCycleModel::OutputCellCycleModelParameters ( out_stream &  rParamsFile  )  [virtual]

Outputs cell cycle model parameters to file.

Parameters:
rParamsFile the file stream to which the parameters are output

Reimplemented from SimpleOxygenBasedCellCycleModel.

Definition at line 111 of file StochasticOxygenBasedCellCycleModel.cpp.

References SimpleOxygenBasedCellCycleModel::OutputCellCycleModelParameters().


Friends And Related Function Documentation

friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented from SimpleOxygenBasedCellCycleModel.

Definition at line 45 of file StochasticOxygenBasedCellCycleModel.hpp.


Member Data Documentation

The duration of the G2 phase, set stochastically.

Definition at line 61 of file StochasticOxygenBasedCellCycleModel.hpp.

Referenced by GenerateStochasticG2Duration(), GetG2Duration(), and serialize().


The documentation for this class was generated from the following files:

Generated on Tue May 31 14:34:16 2011 for Chaste by  doxygen 1.5.5