StochasticOxygenBasedCellCycleModel.hpp

00001 /*
00002 
00003 Copyright (C) University of Oxford, 2005-2011
00004 
00005 University of Oxford means the Chancellor, Masters and Scholars of the
00006 University of Oxford, having an administrative office at Wellington
00007 Square, Oxford OX1 2JD, UK.
00008 
00009 This file is part of Chaste.
00010 
00011 Chaste is free software: you can redistribute it and/or modify it
00012 under the terms of the GNU Lesser General Public License as published
00013 by the Free Software Foundation, either version 2.1 of the License, or
00014 (at your option) any later version.
00015 
00016 Chaste is distributed in the hope that it will be useful, but WITHOUT
00017 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00018 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00019 License for more details. The offer of Chaste under the terms of the
00020 License is subject to the License being interpreted in accordance with
00021 English Law and subject to any action against the University of Oxford
00022 being under the jurisdiction of the English Courts.
00023 
00024 You should have received a copy of the GNU Lesser General Public License
00025 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00026 
00027 */
00028 #ifndef STOCHASTICOXYGENBASEDCELLCYCLEMODEL_HPP_
00029 #define STOCHASTICOXYGENBASEDCELLCYCLEMODEL_HPP_
00030 
00031 #include "SimpleOxygenBasedCellCycleModel.hpp"
00032 #include "RandomNumberGenerator.hpp"
00033 
00041 class StochasticOxygenBasedCellCycleModel : public SimpleOxygenBasedCellCycleModel
00042 {
00043 private:
00044 
00045     friend class boost::serialization::access;
00046     template<class Archive>
00047     void serialize(Archive & archive, const unsigned int version)
00048     {
00049         archive & boost::serialization::base_object<SimpleOxygenBasedCellCycleModel>(*this);
00050 
00051         RandomNumberGenerator* p_gen = RandomNumberGenerator::Instance();
00052         archive & *p_gen;
00053         archive & p_gen;
00054 
00055         archive & mStochasticG2Duration;
00056     }
00057 
00061     double mStochasticG2Duration;
00062 
00068     void GenerateStochasticG2Duration();
00069 
00070 public:
00071 
00075     StochasticOxygenBasedCellCycleModel();
00076 
00080     void InitialiseDaughterCell();
00081 
00085     void Initialise();
00086 
00090     void ResetForDivision();
00091 
00095     double GetG2Duration();
00096 
00101     AbstractCellCycleModel* CreateCellCycleModel();
00102 
00108     virtual void OutputCellCycleModelParameters(out_stream& rParamsFile);
00109 };
00110 
00111 // Declare identifier for the serializer
00112 #include "SerializationExportWrapper.hpp"
00113 CHASTE_CLASS_EXPORT(StochasticOxygenBasedCellCycleModel)
00114 
00115 #endif /*STOCHASTICOXYGENBASEDCELLCYCLEMODEL_HPP_*/

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