CML_noble_varghese_kohl_noble_1998_basic_with_sac Class Reference

#include <NobleVargheseKohlNoble1998WithSac.hpp>

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List of all members.

Public Member Functions

 CML_noble_varghese_kohl_noble_1998_basic_with_sac (boost::shared_ptr< AbstractIvpOdeSolver > pSolver, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)
 ~CML_noble_varghese_kohl_noble_1998_basic_with_sac ()
double GetIIonic (const std::vector< double > *pStateVariables=NULL)
void EvaluateYDerivatives (double var_environment__time, const std::vector< double > &rY, std::vector< double > &rDY)
void SetStretch (double stretch)
double GetStretch ()
double GetIntracellularCalciumConcentration ()

Private Member Functions

template<class Archive>
void serialize (Archive &archive, const unsigned int version)

Private Attributes

double mStretch

Friends

class boost::serialization::access


Detailed Description

The Noble98 'Basic' model, but hand-altered to add a stretch activation channel ionic current, which is dependent on the stretch the cell is under (an additional member variable which can be set be the user/mechanics solver

Definition at line 48 of file NobleVargheseKohlNoble1998WithSac.hpp.


Constructor & Destructor Documentation

CML_noble_varghese_kohl_noble_1998_basic_with_sac::CML_noble_varghese_kohl_noble_1998_basic_with_sac ( boost::shared_ptr< AbstractIvpOdeSolver pSolver,
boost::shared_ptr< AbstractStimulusFunction pIntracellularStimulus 
)

Constructor.

Parameters:
pSolver ODE solver to use
pIntracellularStimulus intracellular stimulus to apply

Definition at line 32 of file NobleVargheseKohlNoble1998WithSac.cpp.

References AbstractCardiacCell::Init(), OdeSystemInformation< ODE_SYSTEM >::Instance(), AbstractParameterisedSystem< std::vector< double > >::mpSystemInfo, and mStretch.

CML_noble_varghese_kohl_noble_1998_basic_with_sac::~CML_noble_varghese_kohl_noble_1998_basic_with_sac ( void   ) 

Destructor.

Definition at line 45 of file NobleVargheseKohlNoble1998WithSac.cpp.


Member Function Documentation

template<class Archive>
void CML_noble_varghese_kohl_noble_1998_basic_with_sac::serialize ( Archive &  archive,
const unsigned int  version 
) [inline, private]

Checkpointing.

Parameters:
archive 
version 

Reimplemented from AbstractCardiacCell.

Definition at line 57 of file NobleVargheseKohlNoble1998WithSac.hpp.

References mStretch.

double CML_noble_varghese_kohl_noble_1998_basic_with_sac::GetIIonic ( const std::vector< double > *  pStateVariables = NULL  )  [virtual]

Compute the total ionic current

Parameters:
pStateVariables state variable vector; if not given, use cell's internal state

Implements AbstractCardiacCellInterface.

Definition at line 49 of file NobleVargheseKohlNoble1998WithSac.cpp.

References HeartConfig::GetCapacitance(), HeartConfig::Instance(), mStretch, and AbstractParameterisedSystem< std::vector< double > >::rGetStateVariables().

void CML_noble_varghese_kohl_noble_1998_basic_with_sac::EvaluateYDerivatives ( double  var_environment__time,
const std::vector< double > &  rY,
std::vector< double > &  rDY 
) [virtual]

Evaluate the RHS of this cell's ODE system.

Parameters:
var_environment__time current simulation time
rY state variable vector
rDY will be filled in with the derivatives

Implements AbstractOdeSystem.

Definition at line 244 of file NobleVargheseKohlNoble1998WithSac.cpp.

References AbstractCardiacCellInterface::GetStimulus(), AbstractCardiacCellInterface::mSetVoltageDerivativeToZero, and mStretch.

void CML_noble_varghese_kohl_noble_1998_basic_with_sac::SetStretch ( double  stretch  )  [inline, virtual]

Set the stretch (overloaded)

Parameters:
stretch stretch

Reimplemented from AbstractCardiacCell.

Definition at line 98 of file NobleVargheseKohlNoble1998WithSac.hpp.

References mStretch.

double CML_noble_varghese_kohl_noble_1998_basic_with_sac::GetStretch (  )  [inline]

Get the stretch

Definition at line 107 of file NobleVargheseKohlNoble1998WithSac.hpp.

References mStretch.

double CML_noble_varghese_kohl_noble_1998_basic_with_sac::GetIntracellularCalciumConcentration (  )  [inline, virtual]

Get the intracellular calcium concentration

Returns:
the intracellular calcium concentration

Reimplemented from AbstractCardiacCell.

Definition at line 117 of file NobleVargheseKohlNoble1998WithSac.hpp.

References AbstractParameterisedSystem< std::vector< double > >::mStateVariables.


Friends And Related Function Documentation

friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented from AbstractCardiacCell.

Definition at line 50 of file NobleVargheseKohlNoble1998WithSac.hpp.


Member Data Documentation

The stretch the cell is under - affects the stretch-activated-channel ionic current

Definition at line 65 of file NobleVargheseKohlNoble1998WithSac.hpp.

Referenced by CML_noble_varghese_kohl_noble_1998_basic_with_sac(), EvaluateYDerivatives(), GetIIonic(), GetStretch(), serialize(), and SetStretch().


The documentation for this class was generated from the following files:

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