Chaste Commit::f2ff7ee04e70ac9d06c57344df8d017dbb12b97b
XmlTools.cpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
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34*/
35
36#include "XmlTools.hpp"
37
38#include <iostream>
39
40#include <xercesc/dom/DOM.hpp>
41#include <xercesc/util/PlatformUtils.hpp>
42#include <xercesc/util/QName.hpp>
43#include <xercesc/util/XMLUniDefs.hpp> // chLatin_*
44#include <xercesc/framework/Wrapper4InputSource.hpp>
45#include <xercesc/validators/common/Grammar.hpp>
46
47#include <xsd/cxx/xml/sax/std-input-source.hxx>
48#include <xsd/cxx/xml/dom/bits/error-handler-proxy.hxx>
49#include <xsd/cxx/tree/exceptions.hxx>
50
51#include "Exception.hpp"
52
53XSD_DOM_AUTO_PTR<xercesc::DOMDocument> XmlTools::ReadXmlFile(
54 const std::string& rFileName,
55 const ::xsd::cxx::tree::properties<char>& rProps,
56 bool validate)
57{
58 XSD_DOM_AUTO_PTR<xercesc::DOMDocument> p_doc;
59 try
60 {
61 // Initialise Xerces
62 xercesc::XMLPlatformUtils::Initialize();
63 // Set up an error handler
64 ::xsd::cxx::tree::error_handler<char> error_handler;
65 // Parse XML to DOM
66 p_doc = XmlTools::ReadFileToDomDocument(rFileName, error_handler, rProps, validate);
67 // Any errors?
68 error_handler.throw_if_failed< ::xsd::cxx::tree::parsing<char> >();
69 }
70 catch (const ::xsd::cxx::tree::parsing<char>& e)
71 {
72 Finalize();
73 // Test for missing schema/xml file
74#if (XSD_INT_VERSION >= 3000000L)
75 const ::xsd::cxx::tree::diagnostics<char>& diags = e.diagnostics();
76 const ::xsd::cxx::tree::error<char>& first_error = diags[0];
77#else
78 const ::xsd::cxx::tree::errors<char>& errors = e.errors();
79 const ::xsd::cxx::tree::error<char>& first_error = errors[0];
80#endif
81 if (first_error.line() == 0u)
82 {
83 std::cerr << first_error << std::endl;
84 EXCEPTION("Missing file parsing configuration file: " + rFileName);
85 }
86 else
87 {
88 std::cerr << e << std::endl;
89 EXCEPTION("XML parsing error in configuration file: " + rFileName);
90 }
91 }
92// LCOV_EXCL_START
93 catch (...)
94 { // This shouldn't happen, but just in case...
95 Finalize();
96 throw;
97 }
98// LCOV_EXCL_STOP
99 return p_doc;
100}
101
102
104{
105 xercesc::XMLPlatformUtils::Terminate();
106}
107
109{
110 // The init=true case will very rarely be used, but a parameter to the constructor is needed
111 // to stop some compilers complaining about an unused variable!
112 if (init)
113 {
114// LCOV_EXCL_START
115 xercesc::XMLPlatformUtils::Initialize();
116// LCOV_EXCL_STOP
117 }
118}
119
124
125XSD_DOM_AUTO_PTR<xercesc::DOMDocument> XmlTools::ReadFileToDomDocument(
126 const std::string& rFileName,
127 ::xsd::cxx::xml::error_handler<char>& rErrorHandler,
128 const ::xsd::cxx::tree::properties<char>& rProps,
129 bool validate)
130{
131 using namespace xercesc;
132 namespace xml = xsd::cxx::xml;
133
134 // Get an implementation of the Load-Store (LS) interface.
135 const XMLCh ls_id [] = {chLatin_L, chLatin_S, chNull};
136 DOMImplementation* p_impl(DOMImplementationRegistry::getDOMImplementation(ls_id));
137
138#if _XERCES_VERSION >= 30000
139 // Xerces-C++ 3.0.0 and later.
140 XSD_DOM_AUTO_PTR<DOMLSParser> p_parser(p_impl->createLSParser(DOMImplementationLS::MODE_SYNCHRONOUS, 0));
141 DOMConfiguration* p_conf(p_parser->getDomConfig());
142
143 // Discard comment nodes in the document.
144 p_conf->setParameter(XMLUni::fgDOMComments, false);
145
146 // Enable datatype normalization.
147 p_conf->setParameter(XMLUni::fgDOMDatatypeNormalization, true);
148
149 // Do not create EntityReference nodes in the DOM tree. No
150 // EntityReference nodes will be created, only the nodes
151 // corresponding to their fully expanded substitution text
152 // will be created.
153 p_conf->setParameter(XMLUni::fgDOMEntities, false);
154
155 // Perform namespace processing.
156 p_conf->setParameter(XMLUni::fgDOMNamespaces, true);
157
158 // Do not include ignorable whitespace in the DOM tree.
159 p_conf->setParameter(XMLUni::fgDOMElementContentWhitespace, false);
160
161 // Enable validation.
162 if (validate)
163 {
164 p_conf->setParameter(XMLUni::fgDOMValidate, true);
165 p_conf->setParameter(XMLUni::fgXercesSchema, true);
166 p_conf->setParameter(XMLUni::fgXercesSchemaFullChecking, false);
167 // Code taken from xsd/cxx/xml/dom/parsing-source.txx
168 if (!rProps.schema_location().empty())
169 {
170 xml::string locn(rProps.schema_location());
171 const void* p_locn(locn.c_str());
172 p_conf->setParameter(XMLUni::fgXercesSchemaExternalSchemaLocation,
173 const_cast<void*>(p_locn));
174 }
175 if (!rProps.no_namespace_schema_location().empty())
176 {
177 xml::string locn(rProps.no_namespace_schema_location());
178 const void* p_locn(locn.c_str());
179
180 p_conf->setParameter(XMLUni::fgXercesSchemaExternalNoNameSpaceSchemaLocation,
181 const_cast<void*>(p_locn));
182 }
183 }
184 else
185 {
186 // This branch is only used by projects
187// LCOV_EXCL_START
188 p_conf->setParameter(XMLUni::fgDOMValidate, false);
189 p_conf->setParameter(XMLUni::fgXercesSchema, false);
190 p_conf->setParameter(XMLUni::fgXercesSchemaFullChecking, false);
191// LCOV_EXCL_STOP
192 }
193
194 // We will release the DOM document ourselves.
195 p_conf->setParameter(XMLUni::fgXercesUserAdoptsDOMDocument, true);
196
197 // Set error handler.
198 xml::dom::bits::error_handler_proxy<char> ehp(rErrorHandler);
199 p_conf->setParameter(XMLUni::fgDOMErrorHandler, &ehp);
200
201#else // _XERCES_VERSION < 30000
202 // Same as above but for Xerces-C++ 2 series.
203 XSD_DOM_AUTO_PTR<DOMBuilder> p_parser(p_impl->createDOMBuilder(DOMImplementationLS::MODE_SYNCHRONOUS, 0));
204
205 p_parser->setFeature(XMLUni::fgDOMComments, false);
206 p_parser->setFeature(XMLUni::fgDOMDatatypeNormalization, true);
207 p_parser->setFeature(XMLUni::fgDOMEntities, false);
208 p_parser->setFeature(XMLUni::fgDOMNamespaces, true);
209 p_parser->setFeature(XMLUni::fgDOMWhitespaceInElementContent, false);
210 p_parser->setFeature(XMLUni::fgXercesUserAdoptsDOMDocument, true);
211
212 // Code taken from xsd/cxx/xml/dom/parsing-source.txx
213 if (validate)
214 {
215 p_parser->setFeature(XMLUni::fgDOMValidation, true);
216 p_parser->setFeature(XMLUni::fgXercesSchema, true);
217 p_parser->setFeature(XMLUni::fgXercesSchemaFullChecking, false);
218 if (!rProps.schema_location().empty())
219 {
220 xml::string locn(rProps.schema_location());
221 const void* p_locn(locn.c_str());
222 p_parser->setProperty(XMLUni::fgXercesSchemaExternalSchemaLocation,
223 const_cast<void*>(p_locn));
224 }
225
226 if (!rProps.no_namespace_schema_location().empty())
227 {
228 xml::string locn(rProps.no_namespace_schema_location());
229 const void* p_locn(locn.c_str());
230
231 p_parser->setProperty(XMLUni::fgXercesSchemaExternalNoNameSpaceSchemaLocation,
232 const_cast<void*>(p_locn));
233 }
234 }
235 else
236 {
237 // This branch is only used by projects
238// LCOV_EXCL_START
239 p_parser->setFeature(XMLUni::fgDOMValidation, false);
240 p_parser->setFeature(XMLUni::fgXercesSchema, false);
241 p_parser->setFeature(XMLUni::fgXercesSchemaFullChecking, false);
242// LCOV_EXCL_STOP
243 }
244
245 xml::dom::bits::error_handler_proxy<char> ehp(rErrorHandler);
246 p_parser->setErrorHandler(&ehp);
247
248#endif // _XERCES_VERSION >= 30000
249
250 // Do the parse
251 XSD_DOM_AUTO_PTR<DOMDocument> p_doc(p_parser->parseURI(rFileName.c_str()));
252
253 if (ehp.failed())
254 {
255 p_doc.reset();
256 }
257
258 return p_doc;
259}
260
261// LCOV_EXCL_START
262void XmlTools::PrintNode(const std::string& rMsg, xercesc::DOMNode* pNode, bool showChildren)
263{
264 std::string prefix = X2C(pNode->getPrefix());
265 std::string name = X2C(pNode->getLocalName());
266 std::string nsuri = X2C(pNode->getNamespaceURI());
267 std::cout << rMsg << " " << pNode << " " << prefix << ":" << name << " in " << nsuri << std::endl;
268 if (showChildren)
269 {
270 for (xercesc::DOMNode* p_node = pNode->getFirstChild();
271 p_node != NULL;
272 p_node = p_node->getNextSibling())
273 {
274 std::cout << " child type " << p_node->getNodeType();
275 PrintNode("", p_node, false);
276 }
277 xercesc::DOMNamedNodeMap* p_attrs = pNode->getAttributes();
278 if (p_attrs)
279 {
280 for (XMLSize_t i=0; i<p_attrs->getLength(); i++)
281 {
282 xercesc::DOMNode* p_attr = p_attrs->item(i);
283 std::string value = X2C(p_attr->getNodeValue());
284 PrintNode(" attr (" + value + ")", p_attr, false);
285 }
286 }
287 }
288}
289// LCOV_EXCL_STOP
290
291xercesc::DOMElement* XmlTools::SetNamespace(xercesc::DOMDocument* pDocument,
292 xercesc::DOMElement* pElement,
293 const XMLCh* pNamespace)
294{
295 using namespace xercesc;
296
297 //PrintNode("Renaming", pElement, true);
298 DOMNamedNodeMap* p_orig_attrs = pElement->getAttributes();
299 std::vector<std::string> attr_values;
300 if (p_orig_attrs)
301 {
302 for (XMLSize_t i=0; i<p_orig_attrs->getLength(); i++)
303 {
304 DOMNode* p_attr = p_orig_attrs->item(i);
305 attr_values.push_back(X2C(p_attr->getNodeValue()));
306 }
307 }
308 DOMElement* p_new_elt = static_cast<DOMElement*>(
309 pDocument->renameNode(pElement, pNamespace, pElement->getLocalName()));
310 //PrintNode(" to", p_new_elt, true);
311 // Fix attributes - some get broken by the rename!
312 if (p_orig_attrs)
313 {
314 DOMNamedNodeMap* p_new_attrs = p_new_elt->getAttributes();
315 assert(p_new_attrs);
316 assert(p_new_attrs == p_orig_attrs);
317 assert(p_new_attrs->getLength() == attr_values.size());
318 for (XMLSize_t i=0; i<p_new_attrs->getLength(); i++)
319 {
320 DOMNode* p_attr = p_new_attrs->item(i);
321 p_attr->setNodeValue(X(attr_values[i]));
322 }
323 }
324 //PrintNode(" after attr fix", p_new_elt, true);
325
326 std::vector<DOMElement*> children = GetChildElements(p_new_elt);
327 for (std::vector<DOMElement*>::iterator it = children.begin(); it != children.end(); ++it)
328 {
329 SetNamespace(pDocument, *it, pNamespace);
330 }
331
332 return p_new_elt;
333}
334
335xercesc::DOMElement* XmlTools::SetNamespace(xercesc::DOMDocument* pDocument,
336 xercesc::DOMElement* pElement,
337 const std::string& rNamespace)
338{
339 return SetNamespace(pDocument, pElement, X(rNamespace));
340}
341
342
343std::vector<xercesc::DOMElement*> XmlTools::GetChildElements(const xercesc::DOMElement* pElement)
344{
345 std::vector<xercesc::DOMElement*> children;
346 for (xercesc::DOMNode* p_node = pElement->getFirstChild();
347 p_node != NULL;
348 p_node = p_node->getNextSibling())
349 {
350 if (p_node->getNodeType() == xercesc::DOMNode::ELEMENT_NODE)
351 {
352 children.push_back(static_cast<xercesc::DOMElement*>(p_node));
353 }
354 }
355 return children;
356}
357
358
359void XmlTools::FindElements(const xercesc::DOMElement* pContextElement,
360 const std::vector<std::string>& rNames,
361 std::vector<xercesc::DOMElement*>& rResults,
362 unsigned depth)
363{
364 for (xercesc::DOMNode* p_node = pContextElement->getFirstChild();
365 p_node != NULL;
366 p_node = p_node->getNextSibling())
367 {
368 if (p_node->getNodeType() == xercesc::DOMNode::ELEMENT_NODE &&
369 X2C(p_node->getLocalName()) == rNames[depth])
370 {
371 xercesc::DOMElement* p_child_elt = static_cast<xercesc::DOMElement*>(p_node);
372 if (depth == rNames.size() - 1)
373 {
374 rResults.push_back(p_child_elt);
375 }
376 else
377 {
378 FindElements(p_child_elt, rNames, rResults, depth+1);
379 }
380 }
381 }
382}
383
384std::vector<xercesc::DOMElement*> XmlTools::FindElements(const xercesc::DOMElement* pContextElement,
385 const std::string& rPath)
386{
387 std::vector<xercesc::DOMElement*> results;
388 std::vector<std::string> path;
389 size_t start_pos = 0;
390 size_t slash_pos = 0;
391 while (slash_pos != std::string::npos)
392 {
393 slash_pos = rPath.find('/', start_pos);
394 if (slash_pos == std::string::npos)
395 {
396 path.push_back(rPath.substr(start_pos));
397 }
398 else
399 {
400 path.push_back(rPath.substr(start_pos, slash_pos-start_pos));
401 }
402 start_pos = slash_pos + 1;
403 }
404 FindElements(pContextElement, path, results);
405 return results;
406}
407
408
409void XmlTools::WrapContentInElement(xercesc::DOMDocument* pDocument,
410 xercesc::DOMElement* pElement,
411 const XMLCh* pNewElementLocalName)
412{
413 const XMLCh* p_namespace_uri = pElement->getNamespaceURI();
414 const XMLCh* p_prefix = pElement->getPrefix();
415 const XMLCh* p_qualified_name;
416 if (p_prefix)
417 {
418// LCOV_EXCL_START
419 // We can't actually cover this code, since versions of the parameters file which need this
420 // transform didn't use a namespace, so can't have a namespace prefix!
421 xercesc::QName qname(p_prefix, pNewElementLocalName, 0);
422 p_qualified_name = qname.getRawName();
423// LCOV_EXCL_STOP
424 }
425 else
426 {
427 p_qualified_name = pNewElementLocalName;
428 }
429 xercesc::DOMElement* p_wrapper_elt = pDocument->createElementNS(p_namespace_uri, p_qualified_name);
430 // Move all child nodes of pElement to be children of p_wrapper_elt
431 xercesc::DOMNodeList* p_children = pElement->getChildNodes();
432 for (unsigned i=0; i<p_children->getLength(); i++)
433 {
434 xercesc::DOMNode* p_child = pElement->removeChild(p_children->item(i));
435 p_wrapper_elt->appendChild(p_child);
436 }
437 // Add the wrapper as the sole child of pElement
438 pElement->appendChild(p_wrapper_elt);
439}
440
441
442std::string XmlTools::EscapeSpaces(const std::string& rPath)
443{
444 std::string escaped_path;
445 for (std::string::const_iterator it = rPath.begin(); it != rPath.end(); ++it)
446 {
447 if (*it == ' ')
448 {
449 escaped_path += "%20";
450 }
451 else
452 {
453 escaped_path += *it;
454 }
455 }
456 return escaped_path;
457}
#define EXCEPTION(message)
Finalizer(bool init)
Definition XmlTools.cpp:108
static xercesc::DOMElement * SetNamespace(xercesc::DOMDocument *pDocument, xercesc::DOMElement *pElement, const std::string &rNamespace)
Definition XmlTools.cpp:335
static std::string EscapeSpaces(const std::string &rPath)
Definition XmlTools.cpp:442
static XSD_DOM_AUTO_PTR< xercesc::DOMDocument > ReadFileToDomDocument(const std::string &rFileName, ::xsd::cxx::xml::error_handler< char > &rErrorHandler, const ::xsd::cxx::tree::properties< char > &rProps, bool validate=true)
Definition XmlTools.cpp:125
static void PrintNode(const std::string &rMsg, xercesc::DOMNode *pNode, bool showChildren=false)
Definition XmlTools.cpp:262
static std::vector< xercesc::DOMElement * > FindElements(const xercesc::DOMElement *pContextElement, const std::string &rPath)
Definition XmlTools.cpp:384
static XSD_DOM_AUTO_PTR< xercesc::DOMDocument > ReadXmlFile(const std::string &rFileName, const ::xsd::cxx::tree::properties< char > &rProps, bool validate=true)
Definition XmlTools.cpp:53
static std::vector< xercesc::DOMElement * > GetChildElements(const xercesc::DOMElement *pElement)
Definition XmlTools.cpp:343
static void WrapContentInElement(xercesc::DOMDocument *pDocument, xercesc::DOMElement *pElement, const XMLCh *pNewElementLocalName)
Definition XmlTools.cpp:409
static void Finalize()
Definition XmlTools.cpp:103