Chaste Commit::f2ff7ee04e70ac9d06c57344df8d017dbb12b97b
FibreReader.hpp
1/*
2
3Copyright (c) 2005-2024, University of Oxford.
4All rights reserved.
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10This file is part of Chaste.
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12Redistribution and use in source and binary forms, with or without
13modification, are permitted provided that the following conditions are met:
14 * Redistributions of source code must retain the above copyright notice,
15 this list of conditions and the following disclaimer.
16 * Redistributions in binary form must reproduce the above copyright notice,
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23THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
25IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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34*/
35
36#ifndef FIBREREADER_HPP_
37#define FIBREREADER_HPP_
38
39#include <string>
40#include <fstream>
41#include <vector>
42
43#include "UblasIncludes.hpp"
44#include "FileFinder.hpp"
45
49typedef enum FibreFileType_
50{
51 AXISYM=0,
52 ORTHO
53} FibreFileType;
54
60template<unsigned DIM>
62{
63private:
65 std::ifstream mDataFile;
66
68 std::string mFilePath;
69
72
77
79 unsigned mNextIndex;
80
82 std::vector<double> mTokens;
83
89 unsigned GetTokensAtNextLine();
90
97
98public:
105 FibreReader(const FileFinder& rFileFinder, FibreFileType fibreFileType);
106
110 ~FibreReader();
111
112
133 void GetFibreSheetAndNormalMatrix(unsigned fibreIndex, c_matrix<double,DIM,DIM>& rFibreMatrix, bool checkOrthogonality=true);
134
149 void GetFibreVector(unsigned fibreIndex, c_vector<double,DIM>& rFibreVector, bool checkNormalised=true);
150
156 {
157 return mNumLinesOfData;
158 }
159
167 void GetAllAxi(std::vector< c_vector<double, DIM> >& direction);
168
178 void GetAllOrtho(std::vector< c_vector<double, DIM> >& first_direction,
179 std::vector< c_vector<double, DIM> >& second_direction,
180 std::vector< c_vector<double, DIM> >& third_direction);
181
185 bool IsBinary()
186 {
187 return mFileIsBinary;
188 }
189};
190
191#endif /*FIBREREADER_HPP_*/
std::vector< double > mTokens
unsigned mNextIndex
void GetFibreVector(unsigned fibreIndex, c_vector< double, DIM > &rFibreVector, bool checkNormalised=true)
unsigned GetTokensAtNextLine()
unsigned mNumLinesOfData
void GetAllAxi(std::vector< c_vector< double, DIM > > &direction)
std::string mFilePath
unsigned mNumItemsPerLine
void GetAllOrtho(std::vector< c_vector< double, DIM > > &first_direction, std::vector< c_vector< double, DIM > > &second_direction, std::vector< c_vector< double, DIM > > &third_direction)
void GetFibreSheetAndNormalMatrix(unsigned fibreIndex, c_matrix< double, DIM, DIM > &rFibreMatrix, bool checkOrthogonality=true)
unsigned GetNumLinesOfData()
void ReadNumLinesOfDataFromFile()
std::ifstream mDataFile