Cylindrical2dMesh.hpp

/*
 
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*/
#ifndef CYLINDRICAL2DMESH_HPP_
#define CYLINDRICAL2DMESH_HPP_
 
#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>
 
#include <cmath>
#include <map>
 
#include "MutableMesh.hpp"
#include "TrianglesMeshWriter.hpp"
 
class Cylindrical2dMesh : public MutableMesh<2,2>
{
    friend class TestCylindrical2dMesh;
private:
 
    double mWidth;
 
    double mTop;
 
    double mBottom;
 
    double mHaloScalingFactor;
 
    double mHaloOffset;
 
    std::vector<unsigned> mLeftOriginals;
 
    std::vector<unsigned> mLeftImages;
 
    std::map<unsigned, unsigned> mImageToLeftOriginalNodeMap;
 
    std::vector<unsigned> mRightOriginals;
 
    std::vector<unsigned> mRightImages;
 
    std::map<unsigned, unsigned> mImageToRightOriginalNodeMap;
 
    std::set<unsigned> mLeftPeriodicBoundaryElementIndices;
 
    std::set<unsigned> mRightPeriodicBoundaryElementIndices;
 
    std::vector<unsigned > mTopHaloNodes;
 
    std::vector<unsigned > mBottomHaloNodes;
 
    bool mMismatchedBoundaryElements;
 
    void UpdateTopAndBottom();
 
    void CreateHaloNodes();
 
    void CreateMirrorNodes();
 
    void ReconstructCylindricalMesh();
 
    void DeleteHaloNodes();
 
    void CorrectNonPeriodicMesh();
 
    void GenerateVectorsOfElementsStraddlingPeriodicBoundaries();
 
    unsigned GetCorrespondingNodeIndex(unsigned nodeIndex);
 
    void UseTheseElementsToDecideMeshing(std::set<unsigned>& rMainSideElements);
 
    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<MutableMesh<2,2> >(*this);
        archive & mWidth;
        archive & mTop;
        archive & mBottom;
        archive & mHaloScalingFactor;
        archive & mHaloOffset;
    }
 
public:
 
    Cylindrical2dMesh(double width);
 
    Cylindrical2dMesh(double width, std::vector<Node<2>*> nodes);
 
    ~Cylindrical2dMesh();
 
    void ReMesh(NodeMap& rMap);
 
    c_vector<double, 2> GetVectorFromAtoB(const c_vector<double, 2>& rLocation1, const c_vector<double, 2>& rLocation2);
 
    void SetNode(unsigned index, ChastePoint<2> point, bool concreteMove);
 
    double GetWidth(const unsigned& rDimension) const;
 
    void SetHaloScalingFactor(double haloScalingFactor);
 
    double GetHaloScalingFactor() const;
 
    void SetHaloOffset(double haloOffset);
 
    double GetHaloOffset() const;
 
 
    unsigned AddNode(Node<2>* pNewNode);
 
    bool GetInstanceOfMismatchedBoundaryNodes();
};
 
namespace boost
{
namespace serialization
{
template<class Archive>
inline void save_construct_data(
    Archive & ar, const Cylindrical2dMesh * t, const unsigned int file_version)
{
    // Save data required to construct instance
    const double width = t->GetWidth(0);
    ar & width;
}
 
template<class Archive>
inline void load_construct_data(
    Archive & ar, Cylindrical2dMesh * t, const unsigned int file_version)
{
    // Retrieve data from archive required to construct new instance
    double width;
    ar & width;
 
    // Invoke inplace constructor to initialise instance
    ::new(t)Cylindrical2dMesh(width);
}
}
} // namespace ...
 
#include "SerializationExportWrapper.hpp"
CHASTE_CLASS_EXPORT(Cylindrical2dMesh)
 
#endif /*CYLINDRICAL2DMESH_HPP_*/