CellSrnModel.hpp

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*/
 
#ifndef CELLSRNMODEL_HPP_
#define CELLSRNMODEL_HPP_
 
#include <vector>
#include "ChasteSerialization.hpp"
#include "ClassIsAbstract.hpp"
#include <boost/serialization/base_object.hpp>
#include <boost/serialization/vector.hpp>
#include "AbstractSrnModel.hpp"
#include "CellCycleModelOdeHandler.hpp"
#include "SimulationTime.hpp"
 
typedef boost::shared_ptr<AbstractSrnModel> AbstractSrnModelPtr;
 
class CellSrnModel : public AbstractSrnModel
{
 
private:
 
    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractSrnModel>(*this);
        archive & mEdgeSrnModels;
        archive & mpInteriorSrnModel;
    }
 
    std::vector<boost::shared_ptr<AbstractSrnModel>> mEdgeSrnModels;
 
    using abstractsrnmodel_t = std::vector<AbstractSrnModelPtr>;
 
    boost::shared_ptr<AbstractSrnModel> mpInteriorSrnModel;
 
protected:
 
    CellSrnModel(const CellSrnModel &rModel);
 
public:
 
    using iterator = abstractsrnmodel_t::iterator;
 
    using const_iterator = abstractsrnmodel_t::const_iterator;
 
    iterator begin() { return mEdgeSrnModels.begin(); }
 
    iterator end() { return mEdgeSrnModels.end(); }
 
    const_iterator begin() const { return mEdgeSrnModels.begin(); }
 
    const_iterator end() const { return mEdgeSrnModels.end(); }
 
    const_iterator cbegin() const { return mEdgeSrnModels.cbegin(); }
 
    const_iterator cend() const { return mEdgeSrnModels.cend(); }
 
    CellSrnModel();
 
    ~CellSrnModel();
 
    virtual void Initialise();
 
    virtual void ResetForDivision();
 
    virtual void SimulateToCurrentTime();
 
    virtual AbstractSrnModel* CreateSrnModel();
 
    void AddEdgeSrn(std::vector<AbstractSrnModelPtr> edgeSrns);
 
    void AddEdgeSrnModel(AbstractSrnModelPtr pEdgeSrn);
 
    unsigned GetNumEdgeSrn() const;
 
    AbstractSrnModelPtr GetEdgeSrn(unsigned index) const;
 
    const std::vector<AbstractSrnModelPtr>& GetEdges() const;
 
    void SetInteriorSrnModel(AbstractSrnModelPtr pInteriorSrn);
 
    AbstractSrnModelPtr GetInteriorSrn() const;
 
    virtual void SetCell(CellPtr pCell);
};
 
// Declare identifier for the serializer
#include "SerializationExportWrapper.hpp"
CHASTE_CLASS_EXPORT(CellSrnModel)
 
#endif /* CELLSRNMODEL_HPP_ */