CellBetaCateninWriter.cpp

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#include "CellBetaCateninWriter.hpp"
#include "AbstractCellPopulation.hpp"
 
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
CellBetaCateninWriter<ELEMENT_DIM, SPACE_DIM>::CellBetaCateninWriter()
    : AbstractCellWriter<ELEMENT_DIM, SPACE_DIM>("results.vizbetacatenin")
{
    this->mVtkCellDataName = "Beta catenin";
}
 
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
double CellBetaCateninWriter<ELEMENT_DIM, SPACE_DIM>::GetCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    AbstractVanLeeuwen2009WntSwatCellCycleModel* p_model = dynamic_cast<AbstractVanLeeuwen2009WntSwatCellCycleModel*>(pCell->GetCellCycleModel());
    double b_cat_cytoplasm = p_model->GetCytoplasmicBetaCateninLevel();
 
    return b_cat_cytoplasm;
}
 
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
void CellBetaCateninWriter<ELEMENT_DIM, SPACE_DIM>::VisitCell(CellPtr pCell, AbstractCellPopulation<ELEMENT_DIM, SPACE_DIM>* pCellPopulation)
{
    if (SPACE_DIM != 2)
    {
        EXCEPTION("This function is only valid in 2D"); // LCOV_EXCL_LINE
    }
 
    unsigned global_index = pCellPopulation->GetLocationIndexUsingCell(pCell);
    double x = pCellPopulation->GetLocationOfCellCentre(pCell)[0];
    double y = pCellPopulation->GetLocationOfCellCentre(pCell)[1];
 
    AbstractVanLeeuwen2009WntSwatCellCycleModel* p_model = dynamic_cast<AbstractVanLeeuwen2009WntSwatCellCycleModel*>(pCell->GetCellCycleModel());
    double b_cat_membrane = p_model->GetMembraneBoundBetaCateninLevel();
    double b_cat_cytoplasm = p_model->GetCytoplasmicBetaCateninLevel();
    double b_cat_nuclear = p_model->GetNuclearBetaCateninLevel();
 
    *this->mpOutStream << global_index << " " << x << " " << y << " " << b_cat_membrane << " " << b_cat_cytoplasm << " " << b_cat_nuclear << " ";
}
 
// Explicit instantiation
template class CellBetaCateninWriter<1,1>;
template class CellBetaCateninWriter<1,2>;
template class CellBetaCateninWriter<2,2>;
template class CellBetaCateninWriter<1,3>;
template class CellBetaCateninWriter<2,3>;
template class CellBetaCateninWriter<3,3>;
 
#include "SerializationExportWrapperForCpp.hpp"
// Declare identifier for the serializer
EXPORT_TEMPLATE_CLASS_ALL_DIMS(CellBetaCateninWriter)