AbstractCardiacCellFactory.hpp

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*/
 
 
#ifndef ABSTRACTCARDIACCELLFACTORY_HPP_
#define ABSTRACTCARDIACCELLFACTORY_HPP_
 
#include <boost/shared_ptr.hpp>
 
#include "AbstractCardiacCellInterface.hpp"
#include "AbstractTetrahedralMesh.hpp"
#include "AbstractIvpOdeSolver.hpp"
#include "EulerIvpOdeSolver.hpp"
#include "HeartGeometryInformation.hpp"
#include "HeartRegionCodes.hpp"
#include "ZeroStimulus.hpp"
 
#ifdef DOXYGEN_CHASTE_ISSUE_199 // See https://github.com/Chaste/Chaste/issues/199
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
#else
template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
#endif
class AbstractCardiacCellFactory
{
private:
    AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* mpMesh;
 
    HeartGeometryInformation<SPACE_DIM>* mpHeartGeometryInformation;
 
protected:
    boost::shared_ptr<ZeroStimulus> mpZeroStimulus;
    boost::shared_ptr<AbstractIvpOdeSolver> mpSolver;
 
public:
    virtual AbstractCardiacCellInterface* CreateCardiacCellForNode(Node<SPACE_DIM>* pNode);
 
    virtual AbstractCardiacCellInterface* CreateCardiacCellForTissueNode(Node<SPACE_DIM>* pNode)=0;
 
    virtual void FinaliseCellCreation(std::vector< AbstractCardiacCellInterface* >* pCellsDistributed,
                                      unsigned lo, unsigned hi);
 
    virtual void FillInCellularTransmuralAreas();
 
    virtual unsigned GetNumberOfCells();
 
    AbstractCardiacCellFactory(boost::shared_ptr<AbstractIvpOdeSolver> pSolver = boost::shared_ptr<AbstractIvpOdeSolver>(new EulerIvpOdeSolver));
    virtual ~AbstractCardiacCellFactory();
 
    virtual void SetMesh(AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* pMesh);
 
    AbstractTetrahedralMesh<ELEMENT_DIM,SPACE_DIM>* GetMesh();
 
    void SetHeartGeometryInformation(HeartGeometryInformation<SPACE_DIM>* pHeartGeometryInformation);
 
    HeartGeometryInformation<SPACE_DIM>* GetHeartGeometryInformation();
};
 
#endif /*ABSTRACTCARDIACCELLFACTORY_HPP_*/