Chaste  Release::3.4
VtkMeshWriter.hpp
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35 
36 #ifndef VTKMESHWRITER_HPP_
37 #define VTKMESHWRITER_HPP_
38 
39 #ifdef CHASTE_VTK
40 //Requires "sudo aptitude install libvtk5-dev" or similar
41 #define _BACKWARD_BACKWARD_WARNING_H 1 //Cut out the strstream deprecated warning for now (gcc4.3)
42 #include <vtkDoubleArray.h>
43 #include <vtkCellData.h>
44 #include <vtkPointData.h>
45 #include <vtkTetra.h>
46 #include <vtkTriangle.h>
47 #include <vtkLine.h>
48 #include <vtkUnstructuredGrid.h>
49 #include <vtkUnstructuredGridWriter.h>
50 #include <vtkXMLUnstructuredGridWriter.h>
51 #include <vtkXMLPUnstructuredGridWriter.h>
52 
53 #include <vtkDataCompressor.h>
54 #include "AbstractTetrahedralMeshWriter.hpp"
55 #include "Version.hpp"
56 
57 
58 #include <map>
59 
60 // Forward declaration prevents circular include chain
61 template<unsigned SPACE_DIM>
62 class NodesOnlyMesh;
63 
70 template <unsigned ELEMENT_DIM, unsigned SPACE_DIM>
71 class VtkMeshWriter : public AbstractTetrahedralMeshWriter<ELEMENT_DIM, SPACE_DIM>
72 {
73 
74 //Requires "sudo aptitude install libvtk5-dev" or similar
75 
76 private:
79  std::map<unsigned, unsigned> mGlobalToNodeIndexMap;
81  std::vector<std::vector<unsigned> > mNodesToSendPerProcess;
82  std::vector<std::vector<unsigned> > mNodesToReceivePerProcess;
86 
93  vtkUnstructuredGrid* mpVtkUnstructedMesh;
94 
99  void MakeVtkMesh();
100 
108  void AugmentCellData();
109 
110 public:
111 
119  VtkMeshWriter(const std::string& rDirectory, const std::string& rBaseName, const bool& rCleanDirectory=true);
120 
124  void WriteFiles();
125 
126 
134  void AddCellData(std::string name, std::vector<double> data);
135 
143  void AddCellData(std::string name, std::vector<c_vector<double, SPACE_DIM> > data);
144 
153  void AddTensorCellData(std::string name, std::vector<c_vector<double,SPACE_DIM*(SPACE_DIM+1)/2> > data);
154 
162  void AddTensorCellData(std::string name, std::vector<c_matrix<double,SPACE_DIM,SPACE_DIM> > data);
163 
164 
172  void AddPointData(std::string name, std::vector<double> data);
173 
181  void AddPointData(std::string name, std::vector<c_vector<double, SPACE_DIM> > data);
182 
190  void AddTensorPointData(std::string name, std::vector<c_matrix<double,SPACE_DIM,SPACE_DIM> > data);
191 
199 
213  bool keepOriginalElementIndexing=true);
214 
220  void AddProvenance(std::string fileName);
221 
225  virtual ~VtkMeshWriter();
226 };
227 
228 #endif //CHASTE_VTK
229 
230 #endif /*VTKMESHWRITER_HPP_*/
vtkUnstructuredGrid * mpVtkUnstructedMesh
void SetParallelFiles(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > &rMesh)
void AddCellData(std::string name, std::vector< double > data)
void AddProvenance(std::string fileName)
void AugmentCellData()
bool mWriteParallelFiles
void WriteFilesUsingMesh(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > &rMesh, bool keepOriginalElementIndexing=true)
void AddTensorCellData(std::string name, std::vector< c_vector< double, SPACE_DIM *(SPACE_DIM+1)/2 > > data)
void AddTensorPointData(std::string name, std::vector< c_matrix< double, SPACE_DIM, SPACE_DIM > > data)
virtual ~VtkMeshWriter()
std::vector< std::vector< unsigned > > mNodesToReceivePerProcess
NodesOnlyMesh< SPACE_DIM > * mpNodesOnlyMesh
std::vector< std::vector< unsigned > > mNodesToSendPerProcess
std::map< unsigned, unsigned > mGlobalToNodeIndexMap
VtkMeshWriter(const std::string &rDirectory, const std::string &rBaseName, const bool &rCleanDirectory=true)
void AddPointData(std::string name, std::vector< double > data)