Chaste  Release::3.4
CellDeltaNotchWriter.cpp
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35 
36 #include "CellDeltaNotchWriter.hpp"
37 #include "AbstractCellPopulation.hpp"
38 
39 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
41  : AbstractCellWriter<ELEMENT_DIM, SPACE_DIM>("celldeltanotch.dat")
42 {
43  this->mVtkCellDataName = "Cell delta";
44 }
45 
46 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
48 {
49  double delta = pCell->GetCellData()->GetItem("delta");
50  return delta;
51 }
52 
53 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
55 {
56  // Output the location index corresponding to this cell
57  unsigned location_index = pCellPopulation->GetLocationIndexUsingCell(pCell);
58  *this->mpOutStream << location_index << " ";
59 
60  // Output this cell's ID
61  unsigned cell_id = pCell->GetCellId();
62  *this->mpOutStream << cell_id << " ";
63 
64  // Output the position of this cell's centre
65  c_vector<double, SPACE_DIM> centre_location = pCellPopulation->GetLocationOfCellCentre(pCell);
66  for (unsigned i=0; i<SPACE_DIM; i++)
67  {
68  *this->mpOutStream << centre_location[i] << " ";
69  }
70 
71  // Output this cell's level of delta
72  double delta = pCell->GetCellData()->GetItem("delta");
73  *this->mpOutStream << delta << " ";
74 
75  // Output this cell's level of notch
76  double notch = pCell->GetCellData()->GetItem("notch");
77  *this->mpOutStream << notch << " ";
78 
79  // Output the mean level of delta among this cell's neighbours
80  double mean_delta = pCell->GetCellData()->GetItem("mean delta");
81  *this->mpOutStream << mean_delta << " ";
82 }
83 
84 // Explicit instantiation
85 template class CellDeltaNotchWriter<1,1>;
86 template class CellDeltaNotchWriter<1,2>;
87 template class CellDeltaNotchWriter<2,2>;
88 template class CellDeltaNotchWriter<1,3>;
89 template class CellDeltaNotchWriter<2,3>;
90 template class CellDeltaNotchWriter<3,3>;
91 
93 // Declare identifier for the serializer
unsigned GetLocationIndexUsingCell(CellPtr pCell)
#define EXPORT_TEMPLATE_CLASS_ALL_DIMS(CLASS)
virtual c_vector< double, SPACE_DIM > GetLocationOfCellCentre(CellPtr pCell)=0
virtual void VisitCell(CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)
double GetCellDataForVtkOutput(CellPtr pCell, AbstractCellPopulation< ELEMENT_DIM, SPACE_DIM > *pCellPopulation)