Chaste Release::3.1
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StochasticDurationCellCycleModel Class Reference

#include <StochasticDurationCellCycleModel.hpp>

Inheritance diagram for StochasticDurationCellCycleModel:
Collaboration diagram for StochasticDurationCellCycleModel:

List of all members.

Public Member Functions

 StochasticDurationCellCycleModel ()
void SetG1Duration ()
AbstractCellCycleModel * CreateCellCycleModel ()
virtual void OutputCellCycleModelParameters (out_stream &rParamsFile)

Private Member Functions

template<class Archive >
void serialize (Archive &archive, const unsigned int version)

Friends

class TestSimpleCellCycleModels
class boost::serialization::access

Detailed Description

A stochastic cell-cycle model where Cells keep dividing with a stochastic cell cycle duration drawn from a uniform distribution.

Definition at line 45 of file StochasticDurationCellCycleModel.hpp.

Constructor & Destructor Documentation

StochasticDurationCellCycleModel::StochasticDurationCellCycleModel ( )

Constructor - just a default, mBirthTime is now set in the AbstractCellCycleModel class. mG1Duration is set very high, it is set for the individual cells when InitialiseDaughterCell is called

Definition at line 39 of file StochasticDurationCellCycleModel.cpp.

Referenced by CreateCellCycleModel().

Member Function Documentation

AbstractCellCycleModel * StochasticDurationCellCycleModel::CreateCellCycleModel ( ) [virtual]

Overridden builder method to create new copies of this cell-cycle model.

Implements AbstractCellCycleModel.

Definition at line 44 of file StochasticDurationCellCycleModel.cpp.

References AbstractCellCycleModel::mBirthTime, AbstractCellCycleModel::mG2Duration, AbstractCellCycleModel::mMDuration, AbstractCellCycleModel::mMinimumGapDuration, AbstractCellCycleModel::mSDuration, AbstractCellCycleModel::mStemCellG1Duration, AbstractCellCycleModel::mTransitCellG1Duration, AbstractCellCycleModel::SetBirthTime(), AbstractCellCycleModel::SetG2Duration(), AbstractCellCycleModel::SetMDuration(), AbstractCellCycleModel::SetMinimumGapDuration(), AbstractCellCycleModel::SetSDuration(), AbstractCellCycleModel::SetStemCellG1Duration(), AbstractCellCycleModel::SetTransitCellG1Duration(), and StochasticDurationCellCycleModel().

void StochasticDurationCellCycleModel::OutputCellCycleModelParameters ( out_stream &  rParamsFile) [virtual]

Outputs cell cycle model parameters to file.

Parameters:
rParamsFilethe file stream to which the parameters are output

Reimplemented from AbstractSimpleCellCycleModel.

Definition at line 97 of file StochasticDurationCellCycleModel.cpp.

template<class Archive >
void StochasticDurationCellCycleModel::serialize ( Archive &  archive,
const unsigned int  version 
) [inline, private]

Archive the cell-cycle model and random number generator, never used directly - boost uses this.

Parameters:
archivethe archive
versionthe current version of this class

Reimplemented from AbstractSimpleCellCycleModel.

Definition at line 60 of file StochasticDurationCellCycleModel.hpp.

References SerializableSingleton< SINGLETON_CLASS >::GetSerializationWrapper(), and RandomNumberGenerator::Instance().

void StochasticDurationCellCycleModel::SetG1Duration ( ) [virtual]

Overridden SetG1Duration Method to add stochastic cell cycle times

Reimplemented from AbstractSimpleCellCycleModel.

Definition at line 77 of file StochasticDurationCellCycleModel.cpp.

References AbstractCellCycleModel::GetStemCellG1Duration(), AbstractCellCycleModel::GetTransitCellG1Duration(), RandomNumberGenerator::Instance(), AbstractCellCycleModel::mG1Duration, AbstractCellCycleModel::mpCell, NEVER_REACHED, and RandomNumberGenerator::ranf().

Friends And Related Function Documentation

friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented from AbstractSimpleCellCycleModel.

Definition at line 52 of file StochasticDurationCellCycleModel.hpp.

The documentation for this class was generated from the following files: