Chaste Release::3.1
CellwiseSourcePde< DIM > Class Template Reference

#include <CellwiseSourcePde.hpp>

Inheritance diagram for CellwiseSourcePde< DIM >:
Collaboration diagram for CellwiseSourcePde< DIM >:

List of all members.

Public Member Functions

 CellwiseSourcePde (MeshBasedCellPopulation< DIM > &rCellPopulation, double coefficient=0.0)
const MeshBasedCellPopulation
< DIM > & 
rGetCellPopulation () const
double GetCoefficient () const
double ComputeConstantInUSourceTerm (const ChastePoint< DIM > &rX, Element< DIM, DIM > *pElement)
double ComputeLinearInUCoeffInSourceTerm (const ChastePoint< DIM > &rX, Element< DIM, DIM > *pElement)
double ComputeLinearInUCoeffInSourceTermAtNode (const Node< DIM > &rNode)
c_matrix< double, DIM, DIM > ComputeDiffusionTerm (const ChastePoint< DIM > &rX)

Private Member Functions

template<class Archive >
void serialize (Archive &archive, const unsigned int version)

Private Attributes

MeshBasedCellPopulation< DIM > & mrCellPopulation
double mCoefficient

Friends

class TestCellBasedPdes
class boost::serialization::access

Detailed Description

template<unsigned DIM>
class CellwiseSourcePde< DIM >

A PDE which has a source at each non-apoptotic cell.

Definition at line 49 of file CellwiseSourcePde.hpp.


Constructor & Destructor Documentation

template<unsigned DIM>
CellwiseSourcePde< DIM >::CellwiseSourcePde ( MeshBasedCellPopulation< DIM > &  rCellPopulation,
double  coefficient = 0.0 
)

Constructor.

Parameters:
rCellPopulationreference to the cell population
coefficientthe coefficient of consumption of nutrient by cells (defaults to 0.0)

Definition at line 41 of file CellwiseSourcePde.cpp.


Member Function Documentation

template<unsigned DIM>
double CellwiseSourcePde< DIM >::ComputeConstantInUSourceTerm ( const ChastePoint< DIM > &  rX,
Element< DIM, DIM > *  pElement 
)

Overridden ComputeConstantInUSourceTerm() method.

Parameters:
rXThe point in space
pElementThe element
Returns:
the constant in u part of the source term, i.e g(x) in Div(D Grad u) + f(x)u + g(x) = 0.

Definition at line 60 of file CellwiseSourcePde.cpp.

template<unsigned DIM>
c_matrix< double, DIM, DIM > CellwiseSourcePde< DIM >::ComputeDiffusionTerm ( const ChastePoint< DIM > &  rX)

Overridden ComputeDiffusionTerm() method.

Parameters:
rXThe point in space at which the diffusion term is computed
Returns:
a matrix.

Definition at line 90 of file CellwiseSourcePde.cpp.

template<unsigned DIM>
double CellwiseSourcePde< DIM >::ComputeLinearInUCoeffInSourceTerm ( const ChastePoint< DIM > &  rX,
Element< DIM, DIM > *  pElement 
)

Overridden ComputeLinearInUCoeffInSourceTerm() method.

Parameters:
rXThe point in space
pElementthe element
Returns:
the coefficient of u in the linear part of the source term, i.e f(x) in Div(D Grad u) + f(x)u + g(x) = 0.

Definition at line 66 of file CellwiseSourcePde.cpp.

References NEVER_REACHED.

template<unsigned DIM>
double CellwiseSourcePde< DIM >::ComputeLinearInUCoeffInSourceTermAtNode ( const Node< DIM > &  rNode)

Overridden ComputeLinearInUCoeffInSourceTermAtNode() method.

Parameters:
rNodereference to the node

Definition at line 73 of file CellwiseSourcePde.cpp.

References Node< SPACE_DIM >::GetIndex().

template<unsigned DIM>
double CellwiseSourcePde< DIM >::GetCoefficient ( ) const
Returns:
mCoefficient (used in archiving).

Definition at line 54 of file CellwiseSourcePde.cpp.

template<unsigned DIM>
const MeshBasedCellPopulation< DIM > & CellwiseSourcePde< DIM >::rGetCellPopulation ( ) const
Returns:
const reference to the cell population (used in archiving).

Definition at line 48 of file CellwiseSourcePde.cpp.

template<unsigned DIM>
template<class Archive >
void CellwiseSourcePde< DIM >::serialize ( Archive &  archive,
const unsigned int  version 
) [inline, private]

Serialize the PDE and its member variables.

Parameters:
archivethe archive
versionthe current version of this class

Reimplemented from AbstractLinearEllipticPde< DIM, DIM >.

Definition at line 64 of file CellwiseSourcePde.hpp.

References CellwiseSourcePde< DIM >::mCoefficient.


Friends And Related Function Documentation

template<unsigned DIM>
friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented from AbstractLinearEllipticPde< DIM, DIM >.

Definition at line 56 of file CellwiseSourcePde.hpp.


Member Data Documentation

template<unsigned DIM>
double CellwiseSourcePde< DIM >::mCoefficient [private]

Coefficient of consumption of nutrient by cells.

Definition at line 74 of file CellwiseSourcePde.hpp.

Referenced by CellwiseSourcePde< DIM >::serialize().

template<unsigned DIM>
MeshBasedCellPopulation<DIM>& CellwiseSourcePde< DIM >::mrCellPopulation [private]

The cell population member.

Definition at line 71 of file CellwiseSourcePde.hpp.


The documentation for this class was generated from the following files: