Chaste Release::3.1
Public Member Functions | Private Member Functions | Private Attributes | Friends
BidomainTissue< SPACE_DIM > Class Template Reference

#include <BidomainTissue.hpp>

Inheritance diagram for BidomainTissue< SPACE_DIM >:
Collaboration diagram for BidomainTissue< SPACE_DIM >:

List of all members.

Public Member Functions

 BidomainTissue (AbstractCardiacCellFactory< SPACE_DIM > *pCellFactory, bool exchangeHalos=false)
 BidomainTissue (AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > *pMesh)
 ~BidomainTissue ()
const c_matrix< double,
SPACE_DIM, SPACE_DIM > & 		rGetExtracellularConductivityTensor (unsigned elementIndex)

Private Member Functions

template<class Archive >
void serialize (Archive &archive, const unsigned int version)
void CreateExtracellularConductivityTensors ()

Private Attributes

AbstractConductivityTensors
< SPACE_DIM, SPACE_DIM > * 		mpExtracellularConductivityTensors

Friends

class TestBidomainTissue
class boost::serialization::access

Detailed Description

template<unsigned SPACE_DIM>
class BidomainTissue< SPACE_DIM >

BidomainTissue class.

See documentation for AbstractCardiacTissue. This class also has extracellular conductivity tensors.

Definition at line 60 of file BidomainTissue.hpp.

Constructor & Destructor Documentation

template<unsigned SPACE_DIM>
BidomainTissue< SPACE_DIM >::BidomainTissue ( AbstractCardiacCellFactory< SPACE_DIM > *  pCellFactory,
bool  exchangeHalos = false 
)

Constructor sets up extracellular conductivity tensors.

Parameters:
pCellFactoryfactory to pass on to the base class constructor
exchangeHalosused in state-variable interpolation. Defaults to false.

Definition at line 45 of file BidomainTissue.cpp.

References BidomainTissue< SPACE_DIM >::CreateExtracellularConductivityTensors().

template<unsigned SPACE_DIM>
BidomainTissue< SPACE_DIM >::BidomainTissue ( AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > *  pMesh)

Archiving constructor

Parameters:
pMesha pointer to the AbstractTetrahedral mesh (recovered from archive).

Definition at line 54 of file BidomainTissue.cpp.

References BidomainTissue< SPACE_DIM >::CreateExtracellularConductivityTensors().

template<unsigned SPACE_DIM>
BidomainTissue< SPACE_DIM >::~BidomainTissue ( )

Destructor

Definition at line 166 of file BidomainTissue.cpp.

Member Function Documentation

template<unsigned SPACE_DIM>
void BidomainTissue< SPACE_DIM >::CreateExtracellularConductivityTensors ( ) [private]

Convenience method for extracellular conductivity tensors creation

Definition at line 61 of file BidomainTissue.cpp.

References RelativeTo::AbsoluteOrCwd, FileFinder::Exists(), HeartConfig::GetConductivityHeterogeneities(), HeartConfig::Instance(), NEVER_REACHED, and PetscTools::ReplicateException().

Referenced by BidomainTissue< SPACE_DIM >::BidomainTissue().

template<unsigned SPACE_DIM>
const c_matrix< double, SPACE_DIM, SPACE_DIM > & BidomainTissue< SPACE_DIM >::rGetExtracellularConductivityTensor ( unsigned  elementIndex) [virtual]

Get the extracellular conductivity tensor for the given element

Parameters:
elementIndexindex of the element of interest

Reimplemented from AbstractCardiacTissue< SPACE_DIM >.

Definition at line 176 of file BidomainTissue.cpp.

template<unsigned SPACE_DIM>
template<class Archive >
void BidomainTissue< SPACE_DIM >::serialize ( Archive &  archive,
const unsigned int  version 
) [inline, private]

Archive the member variables.

Parameters:
archive
version

Definition at line 74 of file BidomainTissue.hpp.

Friends And Related Function Documentation

template<unsigned SPACE_DIM>
friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented from AbstractCardiacTissue< SPACE_DIM >.

Definition at line 66 of file BidomainTissue.hpp.

Member Data Documentation

template<unsigned SPACE_DIM>
AbstractConductivityTensors<SPACE_DIM,SPACE_DIM>* BidomainTissue< SPACE_DIM >::mpExtracellularConductivityTensors [private]

Extracellular conductivity tensors.

Definition at line 81 of file BidomainTissue.hpp.

The documentation for this class was generated from the following files: