Chaste Release::3.1
BackwardEulerIvpOdeSolver Class Reference

#include <BackwardEulerIvpOdeSolver.hpp>

Inheritance diagram for BackwardEulerIvpOdeSolver:
Collaboration diagram for BackwardEulerIvpOdeSolver:

List of all members.

Public Member Functions

 BackwardEulerIvpOdeSolver (unsigned sizeOfOdeSystem)
 ~BackwardEulerIvpOdeSolver ()
void SetEpsilonForNumericalJacobian (double epsilon)
void ForceUseOfNumericalJacobian ()
unsigned GetSystemSize () const

Protected Member Functions

void CalculateNextYValue (AbstractOdeSystem *pAbstractOdeSystem, double timeStep, double time, std::vector< double > &rCurrentYValues, std::vector< double > &rNextYValues)

Private Member Functions

template<class Archive >
void serialize (Archive &archive, const unsigned int version)
void ComputeResidual (AbstractOdeSystem *pAbstractOdeSystem, double timeStep, double time, std::vector< double > &rCurrentYValues, std::vector< double > &rCurrentGuess)
void ComputeJacobian (AbstractOdeSystem *pAbstractOdeSystem, double timeStep, double time, std::vector< double > &rCurrentYValues, std::vector< double > &rCurrentGuess)
void SolveLinearSystem ()
double ComputeNorm (double *pVector)
void ComputeNumericalJacobian (AbstractOdeSystem *pAbstractOdeSystem, double timeStep, double time, std::vector< double > &rCurrentYValues, std::vector< double > &rCurrentGuess)

Private Attributes

unsigned mSizeOfOdeSystem
double mNumericalJacobianEpsilon
bool mForceUseOfNumericalJacobian
doublemResidual
double ** mJacobian
doublemUpdate

Friends

class boost::serialization::access

Detailed Description

A concrete one step ODE solver class that employs the backward Euler method. This numerical method is implicit and hence unconditionally stable.

Definition at line 51 of file BackwardEulerIvpOdeSolver.hpp.


Constructor & Destructor Documentation

BackwardEulerIvpOdeSolver::BackwardEulerIvpOdeSolver ( unsigned  sizeOfOdeSystem)

Constructor.

Parameters:
sizeOfOdeSystemthe number of state variables in the ODE system

Definition at line 210 of file BackwardEulerIvpOdeSolver.cpp.

References mForceUseOfNumericalJacobian, mJacobian, mNumericalJacobianEpsilon, mResidual, mSizeOfOdeSystem, and mUpdate.

BackwardEulerIvpOdeSolver::~BackwardEulerIvpOdeSolver ( )

Destructor.

Definition at line 229 of file BackwardEulerIvpOdeSolver.cpp.

References mJacobian, mResidual, mSizeOfOdeSystem, and mUpdate.


Member Function Documentation

void BackwardEulerIvpOdeSolver::CalculateNextYValue ( AbstractOdeSystem pAbstractOdeSystem,
double  timeStep,
double  time,
std::vector< double > &  rCurrentYValues,
std::vector< double > &  rNextYValues 
) [protected, virtual]

Calculate the solution to the ODE system at the next timestep.

A usage example: BackwardEulerIvpOdeSolver mySolver; OdeSolution solution = mySolver.Solve(pMyOdeSystem, yInit, StartTime, EndTime, TimeStep, SamplingTime);

Parameters:
pAbstractOdeSystemthe ODE system to solve
timeStepdt
timethe current time
rCurrentYValuesthe current (initial) state
rNextYValuesthe state at the next timestep

Implements AbstractOneStepIvpOdeSolver.

Definition at line 167 of file BackwardEulerIvpOdeSolver.cpp.

References ComputeJacobian(), ComputeNorm(), ComputeResidual(), AbstractUntemplatedParameterisedSystem::GetNumberOfStateVariables(), mSizeOfOdeSystem, mUpdate, and SolveLinearSystem().

void BackwardEulerIvpOdeSolver::ComputeJacobian ( AbstractOdeSystem pAbstractOdeSystem,
double  timeStep,
double  time,
std::vector< double > &  rCurrentYValues,
std::vector< double > &  rCurrentGuess 
) [private]

Compute the Jacobian of the ODE system.

Parameters:
pAbstractOdeSystemthe ODE system to solve
timeStepdt
timethe current time
rCurrentYValuesthe current (initial) state
rCurrentGuesscurrent guess for the state at the next timestep

Definition at line 54 of file BackwardEulerIvpOdeSolver.cpp.

References AbstractOdeSystemWithAnalyticJacobian::AnalyticJacobian(), ComputeNumericalJacobian(), AbstractOdeSystem::GetUseAnalyticJacobian(), mForceUseOfNumericalJacobian, mJacobian, and mSizeOfOdeSystem.

Referenced by CalculateNextYValue().

double BackwardEulerIvpOdeSolver::ComputeNorm ( double pVector) [private]

Compute the infinity/maximum norm of a vector. Used by the method CalculateNextYValue.

Parameters:
pVectora pointer to a vector
Returns:
the vector's norm.

Definition at line 112 of file BackwardEulerIvpOdeSolver.cpp.

References mSizeOfOdeSystem.

Referenced by CalculateNextYValue().

void BackwardEulerIvpOdeSolver::ComputeNumericalJacobian ( AbstractOdeSystem pAbstractOdeSystem,
double  timeStep,
double  time,
std::vector< double > &  rCurrentYValues,
std::vector< double > &  rCurrentGuess 
) [private]

Compute the Jacobian of the ODE system numerically.

Parameters:
pAbstractOdeSystemthe ODE system to solve
timeStepdt
timethe current time
rCurrentYValuesthe current (initial) state
rCurrentGuesscurrent guess for the state at the next timestep

Definition at line 125 of file BackwardEulerIvpOdeSolver.cpp.

References ComputeResidual(), mJacobian, mNumericalJacobianEpsilon, mResidual, and mSizeOfOdeSystem.

Referenced by ComputeJacobian().

void BackwardEulerIvpOdeSolver::ComputeResidual ( AbstractOdeSystem pAbstractOdeSystem,
double  timeStep,
double  time,
std::vector< double > &  rCurrentYValues,
std::vector< double > &  rCurrentGuess 
) [private]

Compute the current residual.

Parameters:
pAbstractOdeSystemthe ODE system to solve
timeStepdt
timethe current time
rCurrentYValuesthe current (initial) state
rCurrentGuesscurrent guess for the state at the next timestep

Definition at line 40 of file BackwardEulerIvpOdeSolver.cpp.

References AbstractOdeSystem::EvaluateYDerivatives(), mResidual, and mSizeOfOdeSystem.

Referenced by CalculateNextYValue(), and ComputeNumericalJacobian().

void BackwardEulerIvpOdeSolver::ForceUseOfNumericalJacobian ( )

Force the solver to use the numerical Jacobian even if the ODE system object provides an analytical Jacobian.

Definition at line 248 of file BackwardEulerIvpOdeSolver.cpp.

References mForceUseOfNumericalJacobian.

unsigned BackwardEulerIvpOdeSolver::GetSystemSize ( ) const [inline]

Public method used in archiving.

Returns:
the size of the system

Definition at line 215 of file BackwardEulerIvpOdeSolver.hpp.

References mSizeOfOdeSystem.

template<class Archive >
void BackwardEulerIvpOdeSolver::serialize ( Archive &  archive,
const unsigned int  version 
) [inline, private]

Archive the abstract IVP Solver, never used directly - boost uses this.

Parameters:
archivethe archive
versionthe current version of this class

Reimplemented from AbstractOneStepIvpOdeSolver.

Definition at line 63 of file BackwardEulerIvpOdeSolver.hpp.

References mForceUseOfNumericalJacobian, and mNumericalJacobianEpsilon.

void BackwardEulerIvpOdeSolver::SetEpsilonForNumericalJacobian ( double  epsilon)

Set the epsilon to use in calculating the numerical Jacobian of the ODE system.

Parameters:
epsilon

Definition at line 242 of file BackwardEulerIvpOdeSolver.cpp.

References mNumericalJacobianEpsilon.

void BackwardEulerIvpOdeSolver::SolveLinearSystem ( ) [private]

Solve a linear system of equations to update the current guess for the solution to the ODE system at the next timestep. Used by the method CalculateNextYValue.

Definition at line 85 of file BackwardEulerIvpOdeSolver.cpp.

References mJacobian, mResidual, mSizeOfOdeSystem, and mUpdate.

Referenced by CalculateNextYValue().


Friends And Related Function Documentation

friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented from AbstractOneStepIvpOdeSolver.

Definition at line 55 of file BackwardEulerIvpOdeSolver.hpp.


Member Data Documentation

Whether to force the solver to use the numerical Jacobian even if the ODE system object provides an analytical Jacobian.

Definition at line 82 of file BackwardEulerIvpOdeSolver.hpp.

Referenced by BackwardEulerIvpOdeSolver(), ComputeJacobian(), ForceUseOfNumericalJacobian(), and serialize().

The epsilon to use in calculating the numerical Jacobian of the ODE system.

Definition at line 76 of file BackwardEulerIvpOdeSolver.hpp.

Referenced by BackwardEulerIvpOdeSolver(), ComputeNumericalJacobian(), serialize(), and SetEpsilonForNumericalJacobian().


The documentation for this class was generated from the following files: