NonCachedTetrahedralMesh.cpp

00001 /*
00002 
00003 Copyright (C) University of Oxford, 2005-2011
00004 
00005 University of Oxford means the Chancellor, Masters and Scholars of the
00006 University of Oxford, having an administrative office at Wellington
00007 Square, Oxford OX1 2JD, UK.
00008 
00009 This file is part of Chaste.
00010 
00011 Chaste is free software: you can redistribute it and/or modify it
00012 under the terms of the GNU Lesser General Public License as published
00013 by the Free Software Foundation, either version 2.1 of the License, or
00014 (at your option) any later version.
00015 
00016 Chaste is distributed in the hope that it will be useful, but WITHOUT
00017 ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or
00018 FITNESS FOR A PARTICULAR PURPOSE.  See the GNU Lesser General Public
00019 License for more details. The offer of Chaste under the terms of the
00020 License is subject to the License being interpreted in accordance with
00021 English Law and subject to any action against the University of Oxford
00022 being under the jurisdiction of the English Courts.
00023 
00024 You should have received a copy of the GNU Lesser General Public License
00025 along with Chaste. If not, see <http://www.gnu.org/licenses/>.
00026 
00027 */
00028 
00029 #include "NonCachedTetrahedralMesh.hpp"
00030 #include "Exception.hpp"
00031 
00032 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00033 void NonCachedTetrahedralMesh<ELEMENT_DIM, SPACE_DIM>::RefreshJacobianCachedData()
00034 {
00035     // Don't do any caching
00036 }
00037 
00038 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00039 void NonCachedTetrahedralMesh<ELEMENT_DIM, SPACE_DIM>::GetJacobianForElement(unsigned elementIndex, c_matrix<double, SPACE_DIM, SPACE_DIM>& rJacobian, double& rJacobianDeterminant) const
00040 {
00041     EXCEPTION("Use GetInverseJacobianForElement to retrieve Jacobian data instead.");
00042 }
00043 
00044 
00045 template <unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00046 void NonCachedTetrahedralMesh<ELEMENT_DIM, SPACE_DIM>::GetInverseJacobianForElement(
00047         unsigned elementIndex,
00048         c_matrix<double, SPACE_DIM, ELEMENT_DIM>& rJacobian,
00049         double& rJacobianDeterminant,
00050         c_matrix<double, ELEMENT_DIM, SPACE_DIM>& rInverseJacobian) const
00051 {
00052     this->mElements[this->SolveElementMapping(elementIndex)]->CalculateInverseJacobian(rJacobian, rJacobianDeterminant, rInverseJacobian);
00053 }
00054 
00055 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00056 void NonCachedTetrahedralMesh<ELEMENT_DIM, SPACE_DIM>::GetWeightedDirectionForElement(unsigned elementIndex, c_vector<double, SPACE_DIM>& rWeightedDirection, double& rJacobianDeterminant) const
00057 {
00058     // See comment in AbstractTetrahedralMesh::GetWeightedDirectionForBoundaryElement()
00059     EXCEPTION("Probably redundant method.");
00060 }
00061 
00062 template <unsigned ELEMENT_DIM, unsigned SPACE_DIM>
00063 void NonCachedTetrahedralMesh<ELEMENT_DIM, SPACE_DIM>::GetWeightedDirectionForBoundaryElement(
00064         unsigned elementIndex,
00065         c_vector<double, SPACE_DIM>& rWeightedDirection,
00066         double& rJacobianDeterminant) const
00067 {
00068     this->mBoundaryElements[this->SolveBoundaryElementMapping(elementIndex)]->CalculateWeightedDirection(rWeightedDirection, rJacobianDeterminant );
00069 }
00070 
00071 
00073 // Explicit instantiation
00075 
00076 template class NonCachedTetrahedralMesh<3,3>;
00077 template class NonCachedTetrahedralMesh<2,2>;
00078 template class NonCachedTetrahedralMesh<1,1>;
00079 
00080 
00081 // Serialization for Boost >= 1.36
00082 #include "SerializationExportWrapperForCpp.hpp"
00083 EXPORT_TEMPLATE_CLASS2(NonCachedTetrahedralMesh, 1, 1)
00084 EXPORT_TEMPLATE_CLASS2(NonCachedTetrahedralMesh, 2, 2)
00085 EXPORT_TEMPLATE_CLASS2(NonCachedTetrahedralMesh, 3, 3)