Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <Hdf5ToVtkConverter.hpp>

Inheritance diagram for Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM >:

Collaboration diagram for Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM >:

Public Member Functions
	Hdf5ToVtkConverter (const FileFinder &rInputDirectory, const std::string &rFileBaseName, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, bool parallelVtk, bool usingOriginalNodeOrdering)
Public Member Functions inherited from AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
	AbstractHdf5Converter (const FileFinder &rInputDirectory, const std::string &rFileBaseName, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, const std::string &rSubdirectoryName, unsigned precision)
void	WriteInfoFile ()
	~AbstractHdf5Converter ()
std::string	GetSubdirectory ()

Additional Inherited Members
Protected Member Functions inherited from AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
bool	MoveOntoNextDataset ()
Protected Attributes inherited from AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >
const FileFinder &	mrH5Folder
boost::shared_ptr< Hdf5DataReader >	mpReader
unsigned	mNumVariables
std::string	mFileBaseName
std::vector< std::string >	mDatasetNames
unsigned	mOpenDatasetIndex
AbstractTetrahedralMesh < ELEMENT_DIM, SPACE_DIM > *	mpMesh
OutputFileHandler *	mpOutputFileHandler
std::string	mRelativeSubdirectory
unsigned	mPrecision

Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM >

This class converts from Hdf5 format to Vtk format. The output will be one .vtu file with separate vtkPointData for each time step.

Definition at line 46 of file Hdf5ToVtkConverter.hpp.

Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

Hdf5ToVtkConverter< ELEMENT_DIM, SPACE_DIM >::Hdf5ToVtkConverter	(	const FileFinder &	rInputDirectory,
		const std::string &	rFileBaseName,
		AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *	pMesh,
		bool	parallelVtk,
		bool	usingOriginalNodeOrdering
	)

Constructor, which does the conversion and writes the .vtu file.

Note

This method is collective, and hence must be called by all processes.

Parameters

rInputDirectory	The input directory, relative to CHASTE_TEST_OUTPUT, where the .h5 file has been written
rFileBaseName	The base name of the data file.
pMesh	Pointer to the mesh.
parallelVtk	When true, write with .pvtu and fragment meshes (only works for DistributedTetrahedralMesh)
usingOriginalNodeOrdering	Whether HDF5 output was written using the original node ordering

Todo:

What if the mesh has been scaled, translated or rotated?

Definition at line 49 of file Hdf5ToVtkConverter.cpp.

References VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >::AddPointData(), RelativeTo::ChasteTestOutput, DistributedVectorFactory::CreateVec(), PetscTools::Destroy(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetDistributedVectorFactory(), DistributedTetrahedralMesh< ELEMENT_DIM, SPACE_DIM >::GetNumLocalNodes(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), FileFinder::GetRelativePath(), AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mNumVariables, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::MoveOntoNextDataset(), AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpMesh, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mpReader, AbstractHdf5Converter< ELEMENT_DIM, SPACE_DIM >::mRelativeSubdirectory, VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >::SetParallelFiles(), VtkMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMesh(), and AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMeshReader().

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The documentation for this class was generated from the following files:

• pde/src/postprocessing/Hdf5ToVtkConverter.hpp
• pde/src/postprocessing/Hdf5ToVtkConverter.cpp