Chaste  Release::2018.1
StochasticOxygenBasedCellCycleModel.cpp
1 /*
2 
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34 */
35 
36 #include "StochasticOxygenBasedCellCycleModel.hpp"
37 
40 {
41 }
42 
45  mStochasticG2Duration(rModel.mStochasticG2Duration)
46 {
47  /*
48  * Initialize only those member variables defined in this class.
49  *
50  * The member variables mCurrentHypoxicDuration, mCurrentHypoxiaOnsetTime,
51  * mHypoxicConcentration, mQuiescentConcentration and mCriticalHypoxicDuration
52  * are initialized in the SimpleOxygenBasedCellCycleModel constructor.
53  *
54  * The member variables mCurrentCellCyclePhase, mG1Duration,
55  * mMinimumGapDuration, mStemCellG1Duration, mTransitCellG1Duration,
56  * mSDuration, mG2Duration and mMDuration are initialized in the
57  * AbstractPhaseBasedCellCycleModel constructor.
58  *
59  * The member variables mBirthTime, mReadyToDivide and mDimension
60  * are initialized in the AbstractCellCycleModel constructor.
61  *
62  * Note that mG1Duration and mStochasticG2Duration are (re)set as
63  * soon as InitialiseDaughterCell() is called on the new cell-cycle model.
64  */
65 }
66 
68 {
70 
72  double standard_deviation = 1.0;
73 
74  mStochasticG2Duration = p_gen->NormalRandomDeviate(mean, standard_deviation);
75 
76  // Check that the normal random deviate has not returned a small or negative G2 duration
78  {
80  }
81 }
82 
84 {
87 }
88 
90 {
93 }
94 
96 {
99 }
100 
102 {
103  return mStochasticG2Duration;
104 }
105 
107 {
108  return new StochasticOxygenBasedCellCycleModel(*this);
109 }
110 
112 {
113  // No new parameters to output, so just call method on direct parent class
115 }
116 
117 // Serialization for Boost >= 1.36
virtual void OutputCellCycleModelParameters(out_stream &rParamsFile)
double NormalRandomDeviate(double mean, double stdDev)
static RandomNumberGenerator * Instance()
virtual void OutputCellCycleModelParameters(out_stream &rParamsFile)
#define CHASTE_CLASS_EXPORT(T)