Chaste  Release::2018.1
RandomCellKiller.hpp
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35 
36 #ifndef RANDOMCELLKILLER_HPP_
37 #define RANDOMCELLKILLER_HPP_
38 
39 #include "AbstractCellKiller.hpp"
40 #include "RandomNumberGenerator.hpp"
41 
42 #include "ChasteSerialization.hpp"
43 #include <boost/serialization/base_object.hpp>
44 
45 
62 template<unsigned DIM>
64 {
65 private:
66 
72 
81  template<class Archive>
82  void serialize(Archive & archive, const unsigned int version)
83  {
84  archive & boost::serialization::base_object<AbstractCellKiller<DIM> >(*this);
85 
86  // Make sure the random number generator is also archived
88  archive & p_rng_wrapper;
89  }
90 
91 public:
92 
99  RandomCellKiller(AbstractCellPopulation<DIM>* pCellPopulation, double probabilityOfDeathInAnHour);
100 
104  double GetDeathProbabilityInAnHour() const;
105 
111  void CheckAndLabelSingleCellForApoptosis(CellPtr pCell);
112 
118 
124  void OutputCellKillerParameters(out_stream& rParamsFile);
125 };
126 
129 
130 namespace boost
131 {
132 namespace serialization
133 {
137 template<class Archive, unsigned DIM>
138 inline void save_construct_data(
139  Archive & ar, const RandomCellKiller<DIM> * t, const unsigned int file_version)
140 {
141  // Save data required to construct instance
142  const AbstractCellPopulation<DIM>* const p_cell_population = t->GetCellPopulation();
143  ar << p_cell_population;
144  double prob = t->GetDeathProbabilityInAnHour();
145  ar << prob;
146 }
147 
151 template<class Archive, unsigned DIM>
152 inline void load_construct_data(
153  Archive & ar, RandomCellKiller<DIM> * t, const unsigned int file_version)
154 {
155  // Retrieve data from archive required to construct new instance
156  AbstractCellPopulation<DIM>* p_cell_population;
157  ar >> p_cell_population;
158  double prob;
159  ar >> prob;
160 
161  // Invoke inplace constructor to initialise instance
162  ::new(t)RandomCellKiller<DIM>(p_cell_population, prob);
163 }
164 }
165 } // namespace ...
166 
167 #endif /*RANDOMCELLKILLER_HPP_*/
double mProbabilityOfDeathInAnHour
void serialize(Archive &archive, const unsigned int version)
double GetDeathProbabilityInAnHour() const
void OutputCellKillerParameters(out_stream &rParamsFile)
RandomCellKiller(AbstractCellPopulation< DIM > *pCellPopulation, double probabilityOfDeathInAnHour)
const AbstractCellPopulation< SPACE_DIM > * GetCellPopulation() const
void CheckAndLabelSingleCellForApoptosis(CellPtr pCell)
#define EXPORT_TEMPLATE_CLASS_SAME_DIMS(CLASS)
friend class boost::serialization::access
static RandomNumberGenerator * Instance()
void CheckAndLabelCellsForApoptosisOrDeath()
SerializableSingleton< SINGLETON_CLASS > * GetSerializationWrapper() const
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