Chaste  Release::2018.1
NobleVargheseKohlNoble1998WithSac.hpp
1 /*
2 
3 Copyright (c) 2005-2018, University of Oxford.
4 All rights reserved.
5 
6 University of Oxford means the Chancellor, Masters and Scholars of the
7 University of Oxford, having an administrative office at Wellington
8 Square, Oxford OX1 2JD, UK.
9 
10 This file is part of Chaste.
11 
12 Redistribution and use in source and binary forms, with or without
13 modification, are permitted provided that the following conditions are met:
14  * Redistributions of source code must retain the above copyright notice,
15  this list of conditions and the following disclaimer.
16  * Redistributions in binary form must reproduce the above copyright notice,
17  this list of conditions and the following disclaimer in the documentation
18  and/or other materials provided with the distribution.
19  * Neither the name of the University of Oxford nor the names of its
20  contributors may be used to endorse or promote products derived from this
21  software without specific prior written permission.
22 
23 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
25 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
26 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
27 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
28 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
29 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
30 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
31 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
32 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
33 
34 */
35 
36 #ifndef _CML_noble_varghese_kohl_noble_1998_basic_with_sac_
37 #define _CML_noble_varghese_kohl_noble_1998_basic_with_sac_
38 
39 #include "ChasteSerialization.hpp"
40 #include <boost/serialization/base_object.hpp>
41 
42 #include <cmath>
43 #include <cassert>
44 #include "AbstractCardiacCell.hpp"
45 #include "Exception.hpp"
46 #include "AbstractStimulusFunction.hpp"
47 #include "OdeSystemInformation.hpp"
48 
49 
56 {
57  friend class boost::serialization::access;
63  template<class Archive>
64  void serialize(Archive & archive, const unsigned int version)
65  {
66  archive & mStretch;
67  archive & boost::serialization::base_object<AbstractCardiacCell>(*this);
68  }
69 private:
70 
72  double mStretch;
73 
74 public:
80  CML_noble_varghese_kohl_noble_1998_basic_with_sac(boost::shared_ptr<AbstractIvpOdeSolver> pSolver,
81  boost::shared_ptr<AbstractStimulusFunction> pIntracellularStimulus);
82 
85 
89  double GetIIonic(const std::vector<double>* pStateVariables=NULL);
90 
97  void EvaluateYDerivatives(double var_environment__time,
98  const std::vector<double> &rY,
99  std::vector<double> &rDY);
100 
105  void SetStretch(double stretch)
106  {
107  assert(stretch > 0.0);
108  mStretch = stretch;
109  }
110 
114  double GetStretch()
115  {
116  return mStretch;
117  }
118 
125  {
126  return mStateVariables[16];
127  }
128 };
129 
132 
133 namespace boost
134 {
135  namespace serialization
136  {
143  template<class Archive>
144  inline void save_construct_data(
145  Archive & ar, const CML_noble_varghese_kohl_noble_1998_basic_with_sac * t, const unsigned int fileVersion)
146  {
147  const boost::shared_ptr<AbstractIvpOdeSolver> p_solver = t->GetSolver();
148  const boost::shared_ptr<AbstractStimulusFunction> p_stimulus = t->GetStimulusFunction();
149  ar << p_solver;
150  ar << p_stimulus;
151  }
152 
159  template<class Archive>
160  inline void load_construct_data(
161  Archive & ar, CML_noble_varghese_kohl_noble_1998_basic_with_sac * t, const unsigned int fileVersion)
162  {
163  boost::shared_ptr<AbstractIvpOdeSolver> p_solver;
164  boost::shared_ptr<AbstractStimulusFunction> p_stimulus;
165  ar >> p_solver;
166  ar >> p_stimulus;
167  ::new(t)CML_noble_varghese_kohl_noble_1998_basic_with_sac(p_solver, p_stimulus);
168  }
169  }
170 }
171 
172 #endif
const boost::shared_ptr< AbstractIvpOdeSolver > GetSolver() const
void EvaluateYDerivatives(double var_environment__time, const std::vector< double > &rY, std::vector< double > &rDY)
void serialize(Archive &archive, const unsigned int version)
CML_noble_varghese_kohl_noble_1998_basic_with_sac(boost::shared_ptr< AbstractIvpOdeSolver > pSolver, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)
boost::shared_ptr< AbstractStimulusFunction > GetStimulusFunction()
#define CHASTE_CLASS_EXPORT(T)
gcov doesn't like this file...
double GetIIonic(const std::vector< double > *pStateVariables=NULL)