Chaste  Release::2018.1
Cylindrical2dMesh.hpp
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35 #ifndef CYLINDRICAL2DMESH_HPP_
36 #define CYLINDRICAL2DMESH_HPP_
37 
38 #include "ChasteSerialization.hpp"
39 #include <boost/serialization/base_object.hpp>
40 
41 #include <cmath>
42 #include <map>
43 
44 #include "MutableMesh.hpp"
45 #include "TrianglesMeshWriter.hpp"
46 
55 class Cylindrical2dMesh : public MutableMesh<2,2>
56 {
57  friend class TestCylindrical2dMesh;
58 private:
59 
61  double mWidth;
62 
64  double mTop;
65 
67  double mBottom;
68 
70  std::vector<unsigned> mLeftOriginals;
71 
73  std::vector<unsigned> mLeftImages;
74 
76  std::map<unsigned, unsigned> mImageToLeftOriginalNodeMap;
77 
79  std::vector<unsigned> mRightOriginals;
80 
82  std::vector<unsigned> mRightImages;
83 
85  std::map<unsigned, unsigned> mImageToRightOriginalNodeMap;
86 
89 
92 
94  std::vector<unsigned > mTopHaloNodes;
95 
97  std::vector<unsigned > mBottomHaloNodes;
98 
101 
108  void UpdateTopAndBottom();
109 
118  void CreateHaloNodes();
119 
126  void CreateMirrorNodes();
127 
141 
148  void DeleteHaloNodes();
149 
160  void CorrectNonPeriodicMesh();
161 
173 
181  unsigned GetCorrespondingNodeIndex(unsigned nodeIndex);
182 
193  void UseTheseElementsToDecideMeshing(std::set<unsigned>& rMainSideElements);
194 
208  template<class Archive>
209  void serialize(Archive & archive, const unsigned int version)
210  {
211  archive & boost::serialization::base_object<MutableMesh<2,2> >(*this);
212  archive & mWidth;
213  archive & mTop;
214  archive & mBottom;
215  }
216 
217 public:
218 
224  Cylindrical2dMesh(double width);
225 
233  Cylindrical2dMesh(double width, std::vector<Node<2>*> nodes);
234 
239 
250  void ReMesh(NodeMap& rMap);
251 
262  c_vector<double, 2> GetVectorFromAtoB(const c_vector<double, 2>& rLocation1, const c_vector<double, 2>& rLocation2);
263 
274  void SetNode(unsigned index, ChastePoint<2> point, bool concreteMove);
275 
285  double GetWidth(const unsigned& rDimension) const;
286 
293  unsigned AddNode(Node<2>* pNewNode);
294 
299 };
300 
301 namespace boost
302 {
303 namespace serialization
304 {
308 template<class Archive>
309 inline void save_construct_data(
310  Archive & ar, const Cylindrical2dMesh * t, const unsigned int file_version)
311 {
312  // Save data required to construct instance
313  const double width = t->GetWidth(0);
314  ar & width;
315 }
316 
320 template<class Archive>
321 inline void load_construct_data(
322  Archive & ar, Cylindrical2dMesh * t, const unsigned int file_version)
323 {
324  // Retrieve data from archive required to construct new instance
325  double width;
326  ar & width;
327 
328  // Invoke inplace constructor to initialise instance
329  ::new(t)Cylindrical2dMesh(width);
330 }
331 }
332 } // namespace ...
333 
334 #include "SerializationExportWrapper.hpp"
336 
337 #endif /*CYLINDRICAL2DMESH_HPP_*/
Definition: Node.hpp:58
void SetNode(unsigned index, ChastePoint< 2 > point, bool concreteMove)
std::set< unsigned > mLeftPeriodicBoundaryElementIndices
std::vector< unsigned > mTopHaloNodes
unsigned GetCorrespondingNodeIndex(unsigned nodeIndex)
void UseTheseElementsToDecideMeshing(std::set< unsigned > &rMainSideElements)
std::vector< unsigned > mLeftOriginals
friend class boost::serialization::access
c_vector< double, 2 > GetVectorFromAtoB(const c_vector< double, 2 > &rLocation1, const c_vector< double, 2 > &rLocation2)
std::map< unsigned, unsigned > mImageToRightOriginalNodeMap
std::vector< unsigned > mRightOriginals
bool GetInstanceOfMismatchedBoundaryNodes()
void GenerateVectorsOfElementsStraddlingPeriodicBoundaries()
unsigned AddNode(Node< 2 > *pNewNode)
void serialize(Archive &archive, const unsigned int version)
std::vector< unsigned > mLeftImages
std::vector< unsigned > mRightImages
#define CHASTE_CLASS_EXPORT(T)
Cylindrical2dMesh(double width)
std::set< unsigned > mRightPeriodicBoundaryElementIndices
std::map< unsigned, unsigned > mImageToLeftOriginalNodeMap
std::vector< unsigned > mBottomHaloNodes
double GetWidth(const unsigned &rDimension) const