Chaste  Release::2018.1
CorriasBuistICCModified.hpp
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35 
36 #ifndef CorriasBuistICCModified_HPP_
37 #define CorriasBuistICCModified_HPP_
38 
39 #include "ChasteSerialization.hpp"
40 #include <boost/serialization/base_object.hpp>
41 #include "AbstractCardiacCell.hpp"
42 #include "AbstractStimulusFunction.hpp"
43 
60 {
61  friend class boost::serialization::access;
69  template<class Archive>
70  void serialize(Archive & archive, const unsigned int version)
71  {
72  archive & boost::serialization::base_object<AbstractCardiacCell >(*this);
73  archive & mFractionOfVDDRInPU;
74  archive & mIP3Concentration;
75  archive & mScaleFactorSerca;
77  }
78 
79 private:
80 
93 
94  /* Concentrations */
95  double Ca_o;
96  double Cl_o;
97  double K_o;
98  double Na_o;
100  /* Nernst parameters */
101  double R;
102  double T;
103  double F;
104  double FoRT;
105  double RToF;
107  double Cm ;
109  double Asurf ;
110  double Cl_i ;
111  double K_i ;
112  double Na_i ;
113  double P_cyto;
114  double Vol ;
115  double fc ;
116  double fe ;
117  double fm ;
118  double Q10Ca ;
119  double Q10K ;
120  double Q10Na ;
121  double T_exp ;
123  double G_max_BK ;
124  double G_max_CaCl ;
125  double G_max_ERG ;
126  double G_max_Ltype ;
127  double G_max_NSCC ;
128  double G_max_Na ;
129  double G_max_VDDR ;
130  double G_max_bk ;
131  double G_max_kv11 ;
134  double J_max_PMCA ;
135  double J_max_PMCA_PU ;
136  double J_ERleak ;
137  double J_max_leak ;
138  double Jmax_IP3 ;
139  double Jmax_NaCa ;
140  double Jmax_serca ;
141  double Jmax_uni ;
143  double NaPerm_o_Kperm ;
144  double L ;
145  double P_ER ;
146  double P_PU ;
147  double P_mito ;
148  double b ;
149  double na ;
151  double K_Ca ;
152  double K_Na ;
153  double K_act ;
154  double K_trans ;
155  double k_serca ;
156  double conc ;
157  double d_ACT ;
158  double d_IP3 ;
159  double d_INH ;
161  double tau_d_CaCl;
162  double tau_d_NSCC ;
163  double tauh;
165  double deltaPsi_B;
167  double deltaPsi;
170  //Calculated constants
173  /* Volumes */
174  double V_cyto;
175  double V_ER;
176  double V_MITO;
177  double V_PU;
179  /* Temperature corrections */
181  double T_correction_K;
185  /* Nernst potentials */
186  double E_Na;
187  double E_K;
188  double E_Cl;
189  double E_NSCC;
191  /* Activation gate time constants */
192  double tau_d_ERG;
193  double tau_d_Ltype;
194  double tau_d_Na;
195  double tau_d_VDDR;
196  double tau_d_kv11;
198  /* Inactivation gate time constants */
199  double tau_f_Ltype;
200  double tau_f_Na;
201  double tau_f_VDDR;
202  double tau_f_ca_Ltype;
203  double tau_f_kv11;
205  /* Speed ups */
210 public:
217  CorriasBuistICCModified(boost::shared_ptr<AbstractIvpOdeSolver> pSolver, boost::shared_ptr<AbstractStimulusFunction> pIntracellularStimulus);
218 
223 
227  void VerifyStateVariables();
228 
235  double GetIIonic(const std::vector<double>* pStateVariables=NULL);
236 
244  void EvaluateYDerivatives(double time, const std::vector<double>& rY, std::vector<double>& rDY);
245 
251  void SetFractionOfVDDRInPU(double fraction);
252 
258  void SetIP3Concentration(double concentration);
259 
265  void SetSercaPumpScaleFactor(double scaleFactor);
266 
273  void SetCarbonMonoxideScaleFactor(double scaleFactor);
274 
279 };
280 
281 
282 // Needs to be included last
285 
286 namespace boost
287 {
288  namespace serialization
289  {
290  template<class Archive>
291  inline void save_construct_data(
292  Archive & ar, const CorriasBuistICCModified * t, const unsigned int fileVersion)
293  {
294  const boost::shared_ptr<AbstractIvpOdeSolver> p_solver = t->GetSolver();
295  const boost::shared_ptr<AbstractStimulusFunction> p_stimulus = t->GetStimulusFunction();
296  ar << p_solver;
297  ar << p_stimulus;
298  }
299 
300  template<class Archive>
301  inline void load_construct_data(
302  Archive & ar, CorriasBuistICCModified * t, const unsigned int fileVersion)
303  {
304  boost::shared_ptr<AbstractIvpOdeSolver> p_solver;
305  boost::shared_ptr<AbstractStimulusFunction> p_stimulus;
306  ar >> p_solver;
307  ar >> p_stimulus;
308  ::new(t)CorriasBuistICCModified(p_solver, p_stimulus);
309  }
310  }
311 }
312 
313 #endif // CorriasBuistICCModified_HPP_
void SetIP3Concentration(double concentration)
void serialize(Archive &archive, const unsigned int version)
void SetFractionOfVDDRInPU(double fraction)
const boost::shared_ptr< AbstractIvpOdeSolver > GetSolver() const
double GetIIonic(const std::vector< double > *pStateVariables=NULL)
CorriasBuistICCModified(boost::shared_ptr< AbstractIvpOdeSolver > pSolver, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)
void SetCarbonMonoxideScaleFactor(double scaleFactor)
void EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY)
boost::shared_ptr< AbstractStimulusFunction > GetStimulusFunction()
#define CHASTE_CLASS_EXPORT(T)
gcov doesn't like this file...
void SetSercaPumpScaleFactor(double scaleFactor)