Chaste  Release::2018.1
AbstractLinearParabolicPde.hpp
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35 #ifndef _ABSTRACTLINEARPARABOLICPDE_HPP_
36 #define _ABSTRACTLINEARPARABOLICPDE_HPP_
37 
38 #include "ChasteSerialization.hpp"
39 #include <boost/serialization/base_object.hpp>
40 
41 #include "AbstractLinearPde.hpp"
42 #include "UblasCustomFunctions.hpp"
43 #include "ChastePoint.hpp"
44 #include "Node.hpp"
45 #include "Element.hpp"
46 #include <petscvec.h>
47 
55 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM = ELEMENT_DIM>
56 class AbstractLinearParabolicPde : public AbstractLinearPde<ELEMENT_DIM, SPACE_DIM>
57 {
58 private:
59 
61  friend class boost::serialization::access;
68  template<class Archive>
69  void serialize(Archive & archive, const unsigned int version)
70  {
71  archive & boost::serialization::base_object<AbstractLinearPde<ELEMENT_DIM, SPACE_DIM> >(*this);
72  }
73 
74 public:
75 
80  : AbstractLinearPde<ELEMENT_DIM, SPACE_DIM>()
81  {}
82 
87  {}
88 
94  virtual double ComputeDuDtCoefficientFunction(const ChastePoint<SPACE_DIM>& rX)=0;
95 
103  virtual double ComputeSourceTerm(const ChastePoint<SPACE_DIM>& rX,
104  double u,
105  Element<ELEMENT_DIM,SPACE_DIM>* pElement=nullptr)=0;
106 
113  virtual double ComputeSourceTermAtNode(const Node<SPACE_DIM>& rNode,
114  double u);
115 
116 
124  virtual c_matrix<double, SPACE_DIM, SPACE_DIM> ComputeDiffusionTerm(const ChastePoint<SPACE_DIM>& rX,
125  Element<ELEMENT_DIM,SPACE_DIM>* pElement=NULL)=0;
126 };
127 
128 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
130  double u)
131 {
132  return ComputeSourceTerm(rNode.GetPoint(), u);
133 }
134 
135 #endif //_ABSTRACTLINEARPARABOLICPDE_HPP_
Definition: Node.hpp:58
void serialize(Archive &archive, const unsigned int version)
virtual c_matrix< double, SPACE_DIM, SPACE_DIM > ComputeDiffusionTerm(const ChastePoint< SPACE_DIM > &rX, Element< ELEMENT_DIM, SPACE_DIM > *pElement=NULL)=0
virtual double ComputeDuDtCoefficientFunction(const ChastePoint< SPACE_DIM > &rX)=0
virtual double ComputeSourceTerm(const ChastePoint< SPACE_DIM > &rX, double u, Element< ELEMENT_DIM, SPACE_DIM > *pElement=nullptr)=0
ChastePoint< SPACE_DIM > GetPoint() const
Definition: Node.cpp:133
virtual double ComputeSourceTermAtNode(const Node< SPACE_DIM > &rNode, double u)