Chaste  Release::2018.1
AbstractLinearParabolicPdeSystemForCoupledOdeSystem.hpp
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36 #ifndef ABSTRACTLINEARPARABOLICPDESYSTEMFORCOUPLEDODESYSTEM_HPP_
37 #define ABSTRACTLINEARPARABOLICPDESYSTEMFORCOUPLEDODESYSTEM_HPP_
38 
39 #include "UblasCustomFunctions.hpp"
40 #include "ChastePoint.hpp"
41 #include "Node.hpp"
42 #include "Element.hpp"
43 #include <petscvec.h>
44 
59 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM=ELEMENT_DIM, unsigned PROBLEM_DIM=1>
61 {
62 public:
69  virtual double ComputeDuDtCoefficientFunction(const ChastePoint<SPACE_DIM>& rX, unsigned pdeIndex)=0;
70 
79  virtual double ComputeSourceTerm(const ChastePoint<SPACE_DIM>& rX,
80  c_vector<double,PROBLEM_DIM>& rU,
81  std::vector<double>& rOdeSolution,
82  unsigned pdeIndex)=0;
83 
92  virtual double ComputeSourceTermAtNode(const Node<SPACE_DIM>& rNode,
93  c_vector<double,PROBLEM_DIM>& rU,
94  std::vector<double>& rOdeSolution,
95  unsigned pdeIndex);
96 
104  virtual c_matrix<double, SPACE_DIM, SPACE_DIM> ComputeDiffusionTerm(const ChastePoint<SPACE_DIM>& rX,
105  unsigned pdeIndex,
106  Element<ELEMENT_DIM,SPACE_DIM>* pElement=NULL)=0;
107 
112  {}
113 };
114 
116 // Implementation
118 
119 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
120 double AbstractLinearParabolicPdeSystemForCoupledOdeSystem<ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM>::ComputeSourceTermAtNode(const Node<SPACE_DIM>& rNode, c_vector<double,PROBLEM_DIM>& rU, std::vector<double>& rOdeSolution, unsigned pdeIndex)
121 {
122  return ComputeSourceTerm(rNode.GetPoint(), rU, rOdeSolution, pdeIndex);
123 }
124 
125 #endif /*ABSTRACTLINEARPARABOLICPDESYSTEMFORCOUPLEDODESYSTEM_HPP_*/
Definition: Node.hpp:58
virtual double ComputeDuDtCoefficientFunction(const ChastePoint< SPACE_DIM > &rX, unsigned pdeIndex)=0
virtual double ComputeSourceTerm(const ChastePoint< SPACE_DIM > &rX, c_vector< double, PROBLEM_DIM > &rU, std::vector< double > &rOdeSolution, unsigned pdeIndex)=0
virtual c_matrix< double, SPACE_DIM, SPACE_DIM > ComputeDiffusionTerm(const ChastePoint< SPACE_DIM > &rX, unsigned pdeIndex, Element< ELEMENT_DIM, SPACE_DIM > *pElement=NULL)=0
virtual double ComputeSourceTermAtNode(const Node< SPACE_DIM > &rNode, c_vector< double, PROBLEM_DIM > &rU, std::vector< double > &rOdeSolution, unsigned pdeIndex)
ChastePoint< SPACE_DIM > GetPoint() const
Definition: Node.cpp:133