Chaste  Release::2017.1
UblasCustomFunctions.cpp
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35 
36 #include "UblasCustomFunctions.hpp"
37 
38 c_vector<double, 1> Create_c_vector(double x)
39 {
40  c_vector<double, 1> v;
41  v[0] = x;
42  return v;
43 }
44 
45 c_vector<double, 2> Create_c_vector(double x, double y)
46 {
47  c_vector<double, 2> v;
48  v[0] = x;
49  v[1] = y;
50  return v;
51 }
52 
53 c_vector<double, 3> Create_c_vector(double x, double y, double z)
54 {
55  c_vector<double, 3> v;
56  v[0] = x;
57  v[1] = y;
58  v[2] = z;
59  return v;
60 }
61 
62 c_vector<double,3> CalculateEigenvectorForSmallestNonzeroEigenvalue(c_matrix<double, 3, 3>& rA)
63 {
64  //Check for symmetry
65  if (norm_inf( rA - trans(rA)) > 10*DBL_EPSILON)
66  {
67  EXCEPTION("Matrix should be symmetric");
68  }
69 
70  // Find the eigenvector by brute-force using the power method.
71  // We can't use the inverse method, because the matrix might be singular
72 
73  c_matrix<double,3,3> copy_A(rA);
74  //Eigenvalue 1
75  c_vector<double, 3> eigenvec1 = scalar_vector<double>(3, 1.0);
76 
77  double eigen1 = CalculateMaxEigenpair(copy_A, eigenvec1);
78 
79  // Take out maximum eigenpair
80  c_matrix<double, 3, 3> wielandt_reduce_first_vector = identity_matrix<double>(3,3);
81  wielandt_reduce_first_vector -= outer_prod(eigenvec1, eigenvec1);
82  copy_A = prod(wielandt_reduce_first_vector, copy_A);
83 
84  c_vector<double, 3> eigenvec2 = scalar_vector<double>(3, 1.0);
85  double eigen2 = CalculateMaxEigenpair(copy_A, eigenvec2);
86 
87  // Take out maximum (second) eigenpair
88  c_matrix<double, 3, 3> wielandt_reduce_second_vector = identity_matrix<double>(3,3);
89  wielandt_reduce_second_vector -= outer_prod(eigenvec2, eigenvec2);
90  copy_A = prod(wielandt_reduce_second_vector, copy_A);
91 
92  c_vector<double, 3> eigenvec3 = scalar_vector<double>(3, 1.0);
93  double eigen3 = CalculateMaxEigenpair(copy_A, eigenvec3);
94 
95  //Look backwards through the eigenvalues, checking that they are non-zero
96  if (eigen3 >= DBL_EPSILON)
97  {
98  return eigenvec3;
99  }
100  if (eigen2 >= DBL_EPSILON)
101  {
102  return eigenvec2;
103  }
104  UNUSED_OPT(eigen1);
105  assert( eigen1 > DBL_EPSILON);
106  return eigenvec1;
107 }
108 
109 double CalculateMaxEigenpair(c_matrix<double, 3, 3>& rA, c_vector<double, 3>& rEigenvector)
110 {
111  double norm = 0.0;
112  double step = DBL_MAX;
113  while (step > DBL_EPSILON) //Machine precision
114  {
115  c_vector<double, 3> old_value(rEigenvector);
116  rEigenvector = prod(rA, rEigenvector);
117  norm = norm_2(rEigenvector);
118  rEigenvector /= norm;
119  if (norm < DBL_EPSILON)
120  {
121  //We don't care about a zero eigenvector, so don't polish it
122  break;
123  }
124  step = norm_inf(rEigenvector-old_value);
125  }
126  return norm;
127 }
128 
c_vector< double, 3 > CalculateEigenvectorForSmallestNonzeroEigenvalue(c_matrix< double, 3, 3 > &rA)
#define EXCEPTION(message)
Definition: Exception.hpp:143
c_vector< double, 1 > Create_c_vector(double x)
#define UNUSED_OPT(var)
Definition: Exception.hpp:216
double CalculateMaxEigenpair(c_matrix< double, 3, 3 > &rA, c_vector< double, 3 > &rEigenvector)