RandomCellKiller.hpp

/*

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*/

#ifndef RANDOMCELLKILLER_HPP_
#define RANDOMCELLKILLER_HPP_

#include "AbstractCellKiller.hpp"
#include "RandomNumberGenerator.hpp"

#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>


template<unsigned DIM>
class RandomCellKiller : public AbstractCellKiller<DIM>
{
private:

     double mProbabilityOfDeathInAnHour;

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractCellKiller<DIM> >(*this);

        // Make sure the random number generator is also archived
        SerializableSingleton<RandomNumberGenerator>* p_rng_wrapper = RandomNumberGenerator::Instance()->GetSerializationWrapper();
        archive & p_rng_wrapper;
    }

public:

    RandomCellKiller(AbstractCellPopulation<DIM>* pCellPopulation, double probabilityOfDeathInAnHour);

    double GetDeathProbabilityInAnHour() const;

    void CheckAndLabelSingleCellForApoptosis(CellPtr pCell);

    void CheckAndLabelCellsForApoptosisOrDeath();

    void OutputCellKillerParameters(out_stream& rParamsFile);
};

#include "SerializationExportWrapper.hpp"
EXPORT_TEMPLATE_CLASS_SAME_DIMS(RandomCellKiller)

namespace boost
{
namespace serialization
{
template<class Archive, unsigned DIM>
inline void save_construct_data(
    Archive & ar, const RandomCellKiller<DIM> * t, const unsigned int file_version)
{
    // Save data required to construct instance
    const AbstractCellPopulation<DIM>* const p_cell_population = t->GetCellPopulation();
    ar << p_cell_population;
    double prob = t->GetDeathProbabilityInAnHour();
    ar << prob;
}

template<class Archive, unsigned DIM>
inline void load_construct_data(
    Archive & ar, RandomCellKiller<DIM> * t, const unsigned int file_version)
{
    // Retrieve data from archive required to construct new instance
    AbstractCellPopulation<DIM>* p_cell_population;
    ar >> p_cell_population;
    double prob;
    ar >> prob;

    // Invoke inplace constructor to initialise instance
    ::new(t)RandomCellKiller<DIM>(p_cell_population, prob);
}
}
} // namespace ...

#endif /*RANDOMCELLKILLER_HPP_*/