NobleVargheseKohlNoble1998WithSac.hpp

/*

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   software without specific prior written permission.

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*/

#ifndef _CML_noble_varghese_kohl_noble_1998_basic_with_sac_
#define _CML_noble_varghese_kohl_noble_1998_basic_with_sac_

#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>

#include <cmath>
#include <cassert>
#include "AbstractCardiacCell.hpp"
#include "Exception.hpp"
#include "AbstractStimulusFunction.hpp"
#include "OdeSystemInformation.hpp"


class CML_noble_varghese_kohl_noble_1998_basic_with_sac : public AbstractCardiacCell
{
    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & mStretch;
        archive & boost::serialization::base_object<AbstractCardiacCell>(*this);
    }
private:

    double mStretch;

public:
    CML_noble_varghese_kohl_noble_1998_basic_with_sac(boost::shared_ptr<AbstractIvpOdeSolver> pSolver,
                                                      boost::shared_ptr<AbstractStimulusFunction> pIntracellularStimulus);

    ~CML_noble_varghese_kohl_noble_1998_basic_with_sac();

    double GetIIonic(const std::vector<double>* pStateVariables=NULL);

    void EvaluateYDerivatives(double var_environment__time,
                              const std::vector<double> &rY,
                              std::vector<double> &rDY);

    void SetStretch(double stretch)
    {
        assert(stretch > 0.0);
        mStretch = stretch;
    }

    double GetStretch()
    {
        return mStretch;
    }

    double GetIntracellularCalciumConcentration()
    {
        return mStateVariables[16];
    }
};

#include "SerializationExportWrapper.hpp"
CHASTE_CLASS_EXPORT(CML_noble_varghese_kohl_noble_1998_basic_with_sac)

namespace boost
{
    namespace serialization
    {
        template<class Archive>
        inline void save_construct_data(
            Archive & ar, const CML_noble_varghese_kohl_noble_1998_basic_with_sac * t, const unsigned int fileVersion)
        {
            const boost::shared_ptr<AbstractIvpOdeSolver> p_solver = t->GetSolver();
            const boost::shared_ptr<AbstractStimulusFunction> p_stimulus = t->GetStimulusFunction();
            ar << p_solver;
            ar << p_stimulus;
        }

        template<class Archive>
        inline void load_construct_data(
            Archive & ar, CML_noble_varghese_kohl_noble_1998_basic_with_sac * t, const unsigned int fileVersion)
        {
            boost::shared_ptr<AbstractIvpOdeSolver> p_solver;
            boost::shared_ptr<AbstractStimulusFunction> p_stimulus;
            ar >> p_solver;
            ar >> p_stimulus;
            ::new(t)CML_noble_varghese_kohl_noble_1998_basic_with_sac(p_solver, p_stimulus);
        }
    }
}

#endif