FakeBathCell.hpp

/*

Copyright (c) 2005-2017, University of Oxford.
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This file is part of Chaste.

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 * Redistributions of source code must retain the above copyright notice,
   this list of conditions and the following disclaimer.
 * Redistributions in binary form must reproduce the above copyright notice,
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   software without specific prior written permission.

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*/
#ifndef FAKEBATHCELL_HPP_
#define FAKEBATHCELL_HPP_

#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>

#include "AbstractCardiacCell.hpp"
#include "AbstractStimulusFunction.hpp"
#include <vector>

class FakeBathCell : public AbstractCardiacCell
{
private:
    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractCardiacCell>(*this);
        // In case we're loading an old archive, update mNumberOfStateVariables
        this->mNumberOfStateVariables = 1;
    }

public:
    FakeBathCell(boost::shared_ptr<AbstractIvpOdeSolver> pSolver,
                 boost::shared_ptr<AbstractStimulusFunction> pIntracellularStimulus);

    ~FakeBathCell();

    void EvaluateYDerivatives(double time, const std::vector<double> &rY, std::vector<double> &rDY);

    double GetIIonic(const std::vector<double>* pStateVariables=NULL);

    void ComputeExceptVoltage(double tStart, double tEnd);

    double GetIntracellularCalciumConcentration();
};


#include "SerializationExportWrapper.hpp"
CHASTE_CLASS_EXPORT(FakeBathCell)

namespace boost
{
namespace serialization
{
template<class Archive>
inline void save_construct_data(
    Archive & ar, const FakeBathCell * t, const unsigned int file_version)
{
    const boost::shared_ptr<AbstractIvpOdeSolver> p_solver = t->GetSolver();
    const boost::shared_ptr<AbstractStimulusFunction> p_stimulus = t->GetStimulusFunction();
    ar << p_solver;
    ar << p_stimulus;
}

template<class Archive>
inline void load_construct_data(
    Archive & ar, FakeBathCell * t, const unsigned int file_version)
{

    boost::shared_ptr<AbstractIvpOdeSolver> p_solver;
    boost::shared_ptr<AbstractStimulusFunction> p_stimulus;
    ar >> p_solver;
    ar >> p_stimulus;
    ::new(t)FakeBathCell(p_solver, p_stimulus);
}
}
} // namespace ...


#endif /*FAKEBATHCELL_HPP_*/