Chaste  Release::2017.1
CorriasBuistICCModified.cpp
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35 
36 #include "CorriasBuistICCModified.hpp"
37 #include <cmath>
38 #include <cassert>
39 #include <memory>
40 #include "Exception.hpp"
41 #include "OdeSystemInformation.hpp"
42 #include "HeartConfig.hpp"
43 
44  CorriasBuistICCModified::CorriasBuistICCModified(boost::shared_ptr<AbstractIvpOdeSolver> pSolver, boost::shared_ptr<AbstractStimulusFunction> pIntracellularStimulus)
45  : AbstractCardiacCell(
46  pSolver,
47  18,//reduced by 3 from original
48  0,
49  pIntracellularStimulus)
50  {
51 
52  mpSystemInfo = OdeSystemInformation<CorriasBuistICCModified>::Instance();
53  mFractionOfVDDRInPU = 0.0;
54  mIP3Concentration = 0.0006;
55  mScaleFactorSerca = 1.0;
56  mScaleFactorCarbonMonoxide = 1.0; //initialise to 1 --> no effect
57  //IP3 = 0.00065;// mM *** no longer used ***
58 
60  //Constants
62 
63  /* Concentrations */
64  Ca_o = 2.5 ;// mM
65  Cl_o =134.0 ;// mM
66  K_o =7.0 ;// mM
67  Na_o =137.0 ;// mM
68 
69  /* Nernst parameters */
70  R = 8314.4 ;// pJ/nmol/K
71  T = 310.0 ;// degK
72  F = 96484.6;// nC/nmol
73  FoRT = 0.03743;// 1/mV
74  RToF = 26.7137;// mV
75 
76  Cm = 25.0*1e-6;// 25 pF --> microF
77 
78  Asurf_in_cm_square = Cm / HeartConfig::Instance()->GetCapacitance();
79  Asurf = Asurf_in_cm_square / 0.01;//cm2 --> mm2
80 
81  Cl_i = 88.0 ;// mM
82  K_i = 120.0 ;// mM
83  Na_i = 30.0 ;// mM
84  P_cyto = 0.7;// dim
85  Vol = 1.0e-6 ;// mm3
86  fc = 0.01 ;// dim
87  fe = 0.01 ;// dim
88  fm = 0.0003 ;// dim
89  Q10Ca = 2.1;// dim
90  Q10K = 1.5;// dim
91  Q10Na = 2.45 ;// dim
92  T_exp = 297.0 ;// degK
93 
94  G_max_BK = 23.0 * 1e-6 / Asurf;// 9.2e-3 mS/mm2 (23.0 nS) * 1e-6 (mS/nS) / Asurf (mm2) = mS/mm2
95  G_max_CaCl = 10.1 * 1e-6 / Asurf; //4.04e-3 mS/mm2 (10.1 nS) * 1e-6 (mS/nS) / Asurf (mm2) = mS/mm2
96  G_max_ERG = 2.5 * 1e-6 / Asurf; //1.0e-3 mS/mm2 ( 2.5 nS) * 1e-6 (mS/nS) / Asurf (mm2) = mS/mm2
97  G_max_Ltype = 2.0 * 1e-6 / Asurf;//0.8e-3 mS/mm2 ( 2.0 nS) * 1e-6 (mS/nS) / Asurf (mm2) = mS/mm2
98  G_max_NSCC = 12.15 * 1e-6 / Asurf;//4.86e-3 mS/mm2 (12.15nS) * 1e-6 (mS/nS) / Asurf (mm2) = mS/mm2
99  G_max_Na = 20.0 * 1e-6 / Asurf;//8.0e-3 mS/mm2 (20.0 nS) * 1e-6 (mS/nS) / Asurf (mm2) = mS/mm2
100  G_max_VDDR = 3.0 * 1e-6 / Asurf;//1.2e-3 mS/mm2 ( 3.0 nS) * 1e-6 (mS/nS) / Asurf (mm2) = mS/mm2
101  G_max_bk = 0.15 * 1e-6 / Asurf;//0.06e-3 mS/mm2 (0.15 nS) * 1e-6 (mS/nS) / Asurf (mm2) = mS/mm2
102  G_max_kv11 = 6.3 * 1e-6 / Asurf;//2.52e-3 mS/mm2 ( 6.3 nS) * 1e-6 (mS/nS) / Asurf (mm2) = mS/mm2
103 
104  J_max_PMCA = 0.088464e-3 ;// mM/ms (mM/s) * 1/1000 (s/ms) = mM/ms
105  J_max_PMCA_PU = 0.33e-3;// mM/ms (mM/s) * 1/1000 (s/ms) = mM/ms
106  J_ERleak = 1.666667e-3 ;// 1/ms (1/s) * 1/1000 (ms/s) = 1/ms
107  J_max_leak = 0.0;// 1/ms (1/s) * 1/1000 (ms/s) = 1/ms
108  Jmax_IP3 = 50000.0e-3 ;// 1/ms (1/s) * 1/1000 (ms/s) = 1/ms
109  Jmax_NaCa = 0.05e-3;// mM/ms (mM/s) * 1/1000 (s/ms) = mM/ms
110  Jmax_serca = 1.8333e-3 ;// mM/ms (mM/s) * 1/1000 (s/ms) = mM/ms
111  Jmax_uni = 5000.0e-3 ;// 1/ms (1/s) * 1/1000 (ms/s) = 1/ms
112 
113  NaPerm_o_Kperm = 1.056075 ;// dim
114  L = 50.0 ;// dim
115  P_ER = 0.1;// dim
116  P_PU = 0.001 ;// dim
117  P_mito = 0.12871;// dim
118  b = 0.5;// dim
119  na = 2.8;// dim
120 
121  K_Ca = 0.003 ;// mM
122  K_Na = 9.4;// mM
123  K_act = 0.00038;// mM
124  K_trans = 0.006 ;// mM
125  k_serca = 0.00042;// mM
126  conc = 0.001 ;// mM
127  d_ACT = 0.001 ;// mM
128  d_IP3 = 0.00025;// mM
129  d_INH = 0.0014 ;// mM
130 
131  tau_d_CaCl = 0.03e3 ;// ms(s) * 1000 (ms/s) = ms
132  tau_d_NSCC = 0.35e3 ;// ms(s) * 1000 (ms/s) = ms
133  tauh = 4.0e3 ;// ms(s ) * 1000 (ms/s) = ms
134 
135  deltaPsi_B = 50.0 ;// mV
136  deltaPsi_star = 91.0 ;// mV
137  deltaPsi = 164.000044 ;// mV
138 
140  //Calculated constants
142 
143  /* Volumes */
144  V_cyto = Vol*P_cyto;
145  V_MITO = Vol*P_mito;
146  V_PU = Vol*P_PU;
147  V_ER = Vol*P_ER;
148 
149  /* Temperature corrections */
150  T_correction_Ca = pow(Q10Ca, (T-T_exp)/10.0);
151  T_correction_K = pow(Q10K, (T-T_exp)/10.0);
152  T_correction_Na = pow(Q10Na, (T-T_exp)/10.0);
153  T_correction_BK = 1.1*(T-T_exp)*1e-6/Asurf; //(nS) * 1e-6 (mS/nS) / Asurf (mm2) = mS/mm2
154 
155  /* Nernst potentials */
156  E_Na = RToF*log(Na_o/Na_i);
157  E_K = RToF*log(K_o/K_i);
158  E_Cl = RToF*log(Cl_i/Cl_o);
159  E_NSCC = RToF*log((K_o+Na_o*NaPerm_o_Kperm)/(K_i+Na_i*NaPerm_o_Kperm));
160 
161  /* Activation gate time constants s->ms */
162  tau_d_ERG = T_correction_K*0.003*1000.0;
163  tau_d_Ltype = T_correction_Ca*0.001*1000.0;
164  tau_d_Na = T_correction_Na*0.003*1000.0;
165  tau_d_VDDR = T_correction_Ca*0.006*1000.0;
166  tau_d_kv11 = T_correction_K*0.005*1000.0;
167 
168  /* Inactivation gate time constants s->ms */
169  tau_f_Ltype = T_correction_Ca*0.086*1000.0;
170  tau_f_Na = T_correction_Na*0.0016*1000.0;
171  tau_f_VDDR = T_correction_Ca*0.04*1000.0;
172  tau_f_ca_Ltype = T_correction_Ca*0.002*1000.0;
173  tau_f_kv11 = T_correction_K*0.005*1000.0;
174 
175  /* Speed ups */
176  e2FoRTdPsiMdPsiS = exp(-2.0*FoRT*(deltaPsi-deltaPsi_star));
177  ebFoRTdPsiMdPsiS = exp(b*FoRT*(deltaPsi-deltaPsi_star));
178 
179 
180  Init();
181 
182  }
183 
184  CorriasBuistICCModified::~CorriasBuistICCModified()
185  {
186  }
187 
188  void CorriasBuistICCModified::VerifyStateVariables()
189  {}
190 
191  void CorriasBuistICCModified::SetSercaPumpScaleFactor(double scaleFactor)
192  {
193  mScaleFactorSerca = scaleFactor;
194  }
195 
196  void CorriasBuistICCModified::SetFractionOfVDDRInPU(double fraction)
197  {
198  mFractionOfVDDRInPU = fraction;
199  }
200 
201  void CorriasBuistICCModified::SetIP3Concentration(double concentration)
202  {
203  mIP3Concentration = concentration;
204  }
205 
206  void CorriasBuistICCModified::SetCarbonMonoxideScaleFactor(double scaleFactor)
207  {
208  mScaleFactorCarbonMonoxide = scaleFactor;
209  }
210 
211  double CorriasBuistICCModified::GetCarbonMonoxideScaleFactor()
212  {
213  return mScaleFactorCarbonMonoxide;
214  }
215 
216  double CorriasBuistICCModified::GetIIonic(const std::vector<double>* pStateVariables)
217  {
218  if (!pStateVariables) pStateVariables = &rGetStateVariables();
219  const std::vector<double>& rY = *pStateVariables;
220 
221  // index 0: Vm (mV)
222  // index 1: Ca_i (mM)
223  // index 2: Ca_ER (mM)
224  // index 3: Ca_PU (mM)
225  // index 4: Ca_m (mM)
226  // index 5: h (dim)
227  // index 6: d_CaCl (dim)
228  // index 7: d_ERG (dim)
229  // index 8: d_Ltype (dim)
230  // index 9: d_NSCC (dim)
231  // index 10: d_Na (dim)
232  // index 11: d_VDDR (dim)
233  // index 12: d_kv11 (dim)
234  // index 13: f_Ltype (dim)
235  // index 14: f_Na (dim)
236  // index 15: f_VDDR (dim)
237  // index 16: f_ca_Ltype (dim)
238  // index 17: f_kv11 (dim)
239 
240  double E_Ca = 0.5*RToF*log(Ca_o/rY[1]);
241  /* --- INa --- */
242  double I_Na = G_max_Na*rY[14]*rY[10]*(rY[0]-E_Na);
243  /* --- ILtype --- */
244  double I_Ltype = G_max_Ltype*rY[13]*rY[8]*rY[16]*(rY[0]-E_Ca);
245  /* --- IVDDR --- */
246  double I_VDDR = G_max_VDDR*rY[15]*rY[11]*(rY[0]-E_Ca);
247  /* --- IKv1.1 --- */
248  double I_kv11 = mScaleFactorCarbonMonoxide*G_max_kv11*rY[17]*rY[12]*(rY[0]-E_K);
249  /* --- IERG --- */
250  double I_ERG = mScaleFactorCarbonMonoxide*G_max_ERG*rY[7]*(rY[0]-E_K);
251  /* --- IBK --- */
252  double d_BK = 1.0/(1.0+((exp(rY[0]/-17.0))/((rY[1]/0.001)*(rY[1]/0.001))));
253  double I_BK = (G_max_BK+T_correction_BK)*d_BK*(rY[0]-E_K);
254  /* --- IKb --- */
255  double I_bk = mScaleFactorCarbonMonoxide*G_max_bk*(rY[0]-E_K);
256  /* --- ICaCL --- */
257  double I_CaCl = G_max_CaCl*rY[6]*(rY[0]-E_Cl);
258  /* --- INSCC --- */
259  double I_NSCC = G_max_NSCC*rY[9]*(rY[0]-E_NSCC);
260  /* --- JpmCa --- */
261  double J_PMCA = J_max_PMCA*1.0/(1.0+(0.000298/rY[1]));
262 
263  //i_ionic_in microA/mm2
264  double i_ionic = (I_Na+I_Ltype+I_VDDR+I_kv11+I_ERG+I_BK+I_CaCl+I_NSCC+I_bk+(J_PMCA*2.0*F*V_cyto/Asurf));
265  assert(!std::isnan(i_ionic));
269  return i_ionic / 0.01;
270  }
271 
272  void CorriasBuistICCModified::EvaluateYDerivatives(double time, const std::vector<double>& rY, std::vector<double>& rDY)
273  {
274  // index 0: Vm (mV)
275  // index 1: Ca_i (mM)
276  // index 2: Ca_ER (mM)
277  // index 3: Ca_PU (mM)
278  // index 4: Ca_m (mM)
279  // index 5: h (dim)
280  // index 6: d_CaCl (dim)
281  // index 7: d_ERG (dim)
282  // index 8: d_Ltype (dim)
283  // index 9: d_NSCC (dim)
284  // index 10: d_Na (dim)
285  // index 11: d_VDDR (dim)
286  // index 12: d_kv11 (dim)
287  // index 13: f_Ltype (dim)
288  // index 14: f_Na (dim)
289  // index 15: f_VDDR (dim)
290  // index 16: f_ca_Ltype (dim)
291  // index 17: f_kv11 (dim)
292 
293  /* ----------------- */
294  /* Membrane currents */
295  /* ----------------- */
296 
297  double E_Ca = 0.5*RToF*log(Ca_o/rY[1]);
298 
299  /* --- INa --- */
300  double d_inf_Na = 1.0/(1.0+exp((rY[0]+47.0)/-4.8));
301  double f_inf_Na = 1.0/(1.0+exp((rY[0]+78.0)/7.0));
302  double I_Na = G_max_Na*rY[14]*rY[10]*(rY[0]-E_Na);
303 
304  /* --- ILtype --- */
305  double d_inf_Ltype = 1.0/(1.0+exp((rY[0]+17.0)/-4.3));
306  double f_inf_Ltype = 1.0/(1.0+exp((rY[0]+43.0)/8.9));
307  double f_ca_inf_Ltype = 1.0-1.0/(1.0+exp((rY[1]-0.0001-0.000214)/-0.0000131));
308  double I_Ltype = G_max_Ltype*rY[13]*rY[8]*rY[16]*(rY[0]-E_Ca);
309 
310  /* --- IVDDR --- */
311  double d_inf_VDDR = 1.0/(1.0+exp((rY[0]+26.0)/-6.0));
312  double f_inf_VDDR = 1.0/(1.0+exp((rY[0]+66.0)/6.0));
313  double I_VDDR = G_max_VDDR*rY[15]*rY[11]*(rY[0]-E_Ca);
314 
315  /* --- IKv1.1 --- */
316  double d_inf_kv11 = 1.0/(1.0+exp((rY[0]+25.0)/-7.7));
317  double f_inf_kv11 = 0.5+0.5/(1.0+exp((rY[0]+44.8)/4.4));
318  double I_kv11 = mScaleFactorCarbonMonoxide*G_max_kv11*rY[17]*rY[12]*(rY[0]-E_K);
319 
320  /* --- IERG --- */
321  double d_inf_ERG = 0.2+0.8/(1.0+exp((rY[0]+20.0)/-1.8));
322  double I_ERG = mScaleFactorCarbonMonoxide*G_max_ERG*rY[7]*(rY[0]-E_K);
323 
324  /* --- IBK --- */
325  //LUT d_BK = 1.0/(1.0+exp((rY[0]/-17.0)-2.0*log(rY[1]/0.001)));
326  double d_BK = 1.0/(1.0+((exp(rY[0]/-17.0))/((rY[1]/0.001)*(rY[1]/0.001))));
327  double I_BK = (G_max_BK+T_correction_BK)*d_BK*(rY[0]-E_K);
328 
329  /* --- IKb --- */
330  double I_bk = mScaleFactorCarbonMonoxide*G_max_bk*(rY[0]-E_K);
331 
332  /* --- ICaCL --- */
333  double tmp1 = 0.00014/rY[1];
334  double d_inf_CaCl = 1.0/(1.0+(tmp1*tmp1*tmp1));
335  double I_CaCl = G_max_CaCl*rY[6]*(rY[0]-E_Cl);
336 
337  /* --- INSCC --- */
338  double d_inf_NSCC = 1.0/(1.0+pow(0.0000745/rY[3], -85.0));
339  double I_NSCC = G_max_NSCC*rY[9]*(rY[0]-E_NSCC);
340 
341  /* --- JpmCa --- */
342  double J_PMCA = J_max_PMCA*1.0/(1.0+(0.000298/rY[1]));
343 
344  /* ----------------- */
345  /* ER fluxes */
346  /* ----------------- */
347 
348  //tmp1 = IP3/(IP3+d_IP3);
349  tmp1 = mIP3Concentration/(mIP3Concentration+d_IP3);
350  double tmp2 = rY[3]/(rY[3]+d_ACT);
351  double J_ERout = (Jmax_IP3*tmp1*tmp1*tmp1*tmp2*tmp2*tmp2*rY[5]*rY[5]*rY[5]+J_ERleak)*(rY[2]-rY[3]);
352  double J_SERCA = mScaleFactorSerca*Jmax_serca*rY[3]*rY[3]/(k_serca*k_serca+rY[3]*rY[3]);
353 
354  /* ----------------- */
355  /* Mito fluxes */
356  /* ----------------- */
357 
358  /* Uniporter */
359  tmp1 = 1.0+rY[3]/K_trans;
360  double MWC = conc*(rY[3]/K_trans)*tmp1*tmp1*tmp1/(tmp1*tmp1*tmp1*tmp1+L/pow(1.0+rY[3]/K_act, na));
361  double J_uni = Jmax_uni*(MWC-rY[4]*e2FoRTdPsiMdPsiS)*2.0*FoRT*(deltaPsi-deltaPsi_star)/(1.0-e2FoRTdPsiMdPsiS);
362 
363  /* NaCa Exchanger */
364  double J_NaCa = Jmax_NaCa*ebFoRTdPsiMdPsiS/((1.0+K_Na*K_Na/(Na_i*Na_i))*(1.0+K_Ca/rY[4]));
365 
366  /* ----------------- */
367  /* Cyto fluxes */
368  /* ----------------- */
369 
370  double J_leak = J_max_leak*(rY[3]-rY[1]); /* P.U.->Cai */
371 
372  /* ----------------- */
373  /* Entrainment */
374  /* ----------------- */
375 
376  double E_Ca_PU = 0.5*RToF*log(Ca_o/rY[3]);
377  double I_VDDR_PU = G_max_VDDR*rY[11]*rY[15]*(rY[0]-E_Ca_PU);
378  //J_PMCA_PU = J_max_PMCA_PU*1.0/(1.0+exp(-(rY[3]-0.0001)/0.000015));
379  double J_PMCA_PU = J_max_PMCA_PU*1.0/(1.0+exp(-(rY[3]-0.0001)/0.000015));
380 
381  double i_stim = GetStimulus(time);
382 
383  /* -------------------- */
384  /* Resting Membrane, CO */
385  /* -------------------- */
386 
387  //tmp1 = 2.8*spatVar[1]-0.1;
388  //I_kv11 = I_kv11*tmp1;
389  //I_ERG = I_ERG*tmp1;
390  //I_bk = I_bk*tmp1;
391  double voltage_derivative;
392  if (mSetVoltageDerivativeToZero)
393  {
394  voltage_derivative = 0.0;
395  }
396  else
397  {
398  voltage_derivative = (-1.0 / 0.01) * (i_stim + I_Na+I_Ltype+I_VDDR+I_kv11+I_ERG+I_BK+I_CaCl+I_NSCC+I_bk+(J_PMCA*2.0*F*V_cyto/Asurf));
399  assert(!std::isnan(voltage_derivative));
400  }
401 
402  rDY[0] = voltage_derivative;/* Vm */
403  rDY[1] = fc*((-I_Ltype-I_VDDR)*Asurf/(2.0*F*V_cyto)+J_leak-J_PMCA);
404  rDY[2] = fe*(J_SERCA-J_ERout);
405  rDY[3] = fc*((J_NaCa-J_uni)*V_MITO/V_PU+(J_ERout-J_SERCA)*V_ER/V_PU-J_leak*V_cyto/V_PU);
406  rDY[3]-= fc*(((mFractionOfVDDRInPU*I_VDDR_PU*Asurf)/(2.0*F*V_PU))+J_PMCA_PU); // *** new, 4% IVDDR ***
407  rDY[4] = fm*(J_uni-J_NaCa);
408  rDY[5] = 1.0*(d_INH-rY[5]*(rY[3]+d_INH))/tauh;
409  rDY[6] = (d_inf_CaCl-rY[6])/tau_d_CaCl;
410  rDY[7] = (d_inf_ERG-rY[7])/tau_d_ERG;
411  rDY[8] = (d_inf_Ltype-rY[8])/tau_d_Ltype;
412  rDY[9] = (d_inf_NSCC-rY[9])/tau_d_NSCC;
413  rDY[10] = (d_inf_Na-rY[10])/tau_d_Na;
414  rDY[11] = (d_inf_VDDR-rY[11])/tau_d_VDDR;
415  rDY[12] = (d_inf_kv11-rY[12])/tau_d_kv11;
416  rDY[13] = (f_inf_Ltype-rY[13])/tau_f_Ltype;
417  rDY[14] = (f_inf_Na-rY[14])/tau_f_Na;
418  rDY[15] = (f_inf_VDDR-rY[15])/tau_f_VDDR;
419  rDY[16] = (f_ca_inf_Ltype-rY[16])/tau_f_ca_Ltype;
420  rDY[17] = (f_inf_kv11-rY[17])/tau_f_kv11;
421  }
422 
423 template<>
424 void OdeSystemInformation<CorriasBuistICCModified>::Initialise(void)
425 {
426 
427  this->mSystemName = "ICC_model_Martincode";
428 
429  this->mVariableNames.push_back("Vm");
430  this->mVariableUnits.push_back("mV");
431  this->mInitialConditions.push_back(-67.53988); // Vm (mV);
432 
433  this->mVariableNames.push_back("Ca_i");
434  this->mVariableUnits.push_back("mM");
435  this->mInitialConditions.push_back(0.00001); // Ca_i (mM));
436 
437  this->mVariableNames.push_back("Ca_ER");
438  this->mVariableUnits.push_back("mM");
439  this->mInitialConditions.push_back(0.00695); // Ca_ER (mM));
440 
441  this->mVariableNames.push_back("Ca_PU");
442  this->mVariableUnits.push_back("mM");
443  this->mInitialConditions.push_back(0.000095); // Ca_PU (mM));
444 
445  this->mVariableNames.push_back("Ca_m");
446  this->mVariableUnits.push_back("mM");
447  this->mInitialConditions.push_back(0.000138); // Ca_m (mM));
448 
449  this->mVariableNames.push_back("h");
450  this->mVariableUnits.push_back("dimensionless");
451  this->mInitialConditions.push_back(0.939443); // h (dim));
452 
453  this->mVariableNames.push_back("d_CaCl");
454  this->mVariableUnits.push_back("dimensionless");
455  this->mInitialConditions.push_back(0.00038); // d_CaCl (dim));
456 
457  this->mVariableNames.push_back("d_ERG");
458  this->mVariableUnits.push_back("dimensionless");
459  this->mInitialConditions.push_back(0.2); // d_ERG (dim));
460 
461  this->mVariableNames.push_back("d_Ltype");
462  this->mVariableUnits.push_back("dimensionless");
463  this->mInitialConditions.push_back(0.000008); // d_Ltype (dim));
464 
465  this->mVariableNames.push_back("d_NSCC");
466  this->mVariableUnits.push_back("dimensionless");
467  this->mInitialConditions.push_back(0.0); // d_NSCC (dim));
468 
469  this->mVariableNames.push_back("d_Na");
470  this->mVariableUnits.push_back("dimensionless");
471  this->mInitialConditions.push_back(0.013778); // d_Na (dim));
472 
473  this->mVariableNames.push_back("d_VDDR");
474  this->mVariableUnits.push_back("dimensionless");
475  this->mInitialConditions.push_back(0.00099); // d_VDDR (dim));
476 
477  this->mVariableNames.push_back("d_kv11");
478  this->mVariableUnits.push_back("dimensionless");
479  this->mInitialConditions.push_back(0.003992); // d_kv11 (dim));
480 
481  this->mVariableNames.push_back("f_Ltype");
482  this->mVariableUnits.push_back("dimensionless");
483  this->mInitialConditions.push_back( 0.940072); // f_Ltype (dim));
484 
485  this->mVariableNames.push_back("f_Na");
486  this->mVariableUnits.push_back("dimensionless");
487  this->mInitialConditions.push_back(0.182426); // f_Na (dim));
488 
489  this->mVariableNames.push_back("f_VDDR");
490  this->mVariableUnits.push_back("dimensionless");
491  this->mInitialConditions.push_back(0.562177); // f_VDDR (dim));
492 
493  this->mVariableNames.push_back("f_ca_Ltype");
494  this->mVariableUnits.push_back("dimensionless");
495  this->mInitialConditions.push_back(1.0); // f_ca_Ltype (dim));
496 
497  this->mVariableNames.push_back("f_kv11");
498  this->mVariableUnits.push_back("dimensionless");
499  this->mInitialConditions.push_back(0.997143); // f_kv11 (dim));
500 
501  this->mInitialised = true;
502 }
503 
504 
505 // Serialization for Boost >= 1.36
506 #include "SerializationExportWrapperForCpp.hpp"
507 CHASTE_CLASS_EXPORT(CorriasBuistICCModified)
OdeSystemInformation::Instance
static boost::shared_ptr< OdeSystemInformation< ODE_SYSTEM > > Instance()
Definition: OdeSystemInformation.hpp:114
CorriasBuistICCModified::SetIP3Concentration
void SetIP3Concentration(double concentration)
Definition: CorriasBuistICCModified.cpp:201
CorriasBuistICCModified::SetFractionOfVDDRInPU
void SetFractionOfVDDRInPU(double fraction)
Definition: CorriasBuistICCModified.cpp:196
CorriasBuistICCModified::GetIIonic
double GetIIonic(const std::vector< double > *pStateVariables=NULL)
Definition: CorriasBuistICCModified.cpp:216
CorriasBuistICCModified::CorriasBuistICCModified
CorriasBuistICCModified(boost::shared_ptr< AbstractIvpOdeSolver > pSolver, boost::shared_ptr< AbstractStimulusFunction > pIntracellularStimulus)
Definition: CorriasBuistICCModified.cpp:44
CorriasBuistICCModified::SetCarbonMonoxideScaleFactor
void SetCarbonMonoxideScaleFactor(double scaleFactor)
Definition: CorriasBuistICCModified.cpp:206
CorriasBuistICCModified::EvaluateYDerivatives
void EvaluateYDerivatives(double time, const std::vector< double > &rY, std::vector< double > &rDY)
Definition: CorriasBuistICCModified.cpp:272
AbstractUntemplatedParameterisedSystem::mpSystemInfo
boost::shared_ptr< AbstractOdeSystemInformation > mpSystemInfo
Definition: AbstractUntemplatedParameterisedSystem.hpp:301
HeartConfig::GetCapacitance
double GetCapacitance() const
Definition: HeartConfig.cpp:1580
CHASTE_CLASS_EXPORT
#define CHASTE_CLASS_EXPORT(T)
Definition: SerializationExportWrapper.hpp:347
HeartConfig::Instance
static HeartConfig * Instance()
Definition: HeartConfig.cpp:207
CorriasBuistICCModified::SetSercaPumpScaleFactor
void SetSercaPumpScaleFactor(double scaleFactor)
Definition: CorriasBuistICCModified.cpp:191