Chaste  Release::2017.1
ColumnDataReader.hpp
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35 
36 #ifndef _COLUMNDATAREADER_HPP_
37 #define _COLUMNDATAREADER_HPP_
38 
39 #include "AbstractDataReader.hpp"
40 
41 #include <string>
42 #include <vector>
43 #include <map>
44 
45 #include "FileFinder.hpp"
46 
51 {
52 private:
53 
54  std::map<std::string, int> mVariablesToColumns;
55  std::map<std::string, std::string> mVariablesToUnits;
59  std::string mInfoFilename;
60  std::string mDataFilename;
61  std::string mAncillaryFilename;
62  std::vector<double> mValues;
63  unsigned mFieldWidth;
70  void PushColumnEntryFromLine(const std::string& rLine, int col);
71 
78  void ReadColumnFromFile(const std::string& rFilename, int col);
79 
87  void ReadValueFromFile(const std::string& rFilename, int col, int row);
88 
96  void CheckFiles(const std::string& rDirectory, const std::string& rBaseName);
97 
98 public:
99 
117  ColumnDataReader(const std::string& rDirectory,
118  const std::string& rBaseName,
119  bool makeAbsolute=true);
120 
128  ColumnDataReader(const FileFinder& rDirectory,
129  const std::string& rBaseName);
130 
136  std::vector<double> GetValues(const std::string& rVariableName);
137 
144  std::vector<double> GetValues(const std::string& rVariableName, int fixedDimension);
145 
149  std::vector<double> GetUnlimitedDimensionValues();
150 
156  bool HasValues(const std::string& rVariableName);
157 
161  unsigned GetFieldWidth();
162 };
163 
164 #endif //_COLUMNDATAREADER_HPP_
std::string mAncillaryFilename
std::map< std::string, int > mVariablesToColumns
std::string mInfoFilename
bool HasValues(const std::string &rVariableName)
std::vector< double > GetValues(const std::string &rVariableName)
void ReadColumnFromFile(const std::string &rFilename, int col)
std::string mDataFilename
std::map< std::string, std::string > mVariablesToUnits
std::vector< double > GetUnlimitedDimensionValues()
void CheckFiles(const std::string &rDirectory, const std::string &rBaseName)
ColumnDataReader(const std::string &rDirectory, const std::string &rBaseName, bool makeAbsolute=true)
void ReadValueFromFile(const std::string &rFilename, int col, int row)
std::vector< double > mValues
void PushColumnEntryFromLine(const std::string &rLine, int col)