Chaste  Release::2017.1
AbstractLinearPdeSolver.hpp
1 /*
2 
3 Copyright (c) 2005-2017, University of Oxford.
4 All rights reserved.
5 
6 University of Oxford means the Chancellor, Masters and Scholars of the
7 University of Oxford, having an administrative office at Wellington
8 Square, Oxford OX1 2JD, UK.
9 
10 This file is part of Chaste.
11 
12 Redistribution and use in source and binary forms, with or without
13 modification, are permitted provided that the following conditions are met:
14  * Redistributions of source code must retain the above copyright notice,
15  this list of conditions and the following disclaimer.
16  * Redistributions in binary form must reproduce the above copyright notice,
17  this list of conditions and the following disclaimer in the documentation
18  and/or other materials provided with the distribution.
19  * Neither the name of the University of Oxford nor the names of its
20  contributors may be used to endorse or promote products derived from this
21  software without specific prior written permission.
22 
23 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
25 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
26 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
27 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
28 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
29 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
30 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
31 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
32 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
33 
34 */
35 
36 #ifndef ABSTRACTLINEARPDESOLVER_HPP_
37 #define ABSTRACTLINEARPDESOLVER_HPP_
38 
39 #include "LinearSystem.hpp"
40 #include "BoundaryConditionsContainer.hpp"
41 #include "AbstractTetrahedralMesh.hpp"
42 #include "HeartEventHandler.hpp"
43 
48 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
49 class AbstractLinearPdeSolver : private boost::noncopyable
50 {
51 protected:
52 
55 
58 
59 public:
60 
67  : mpLinearSystem(nullptr),
68  mpMesh(pMesh)
69  {
70  assert(pMesh!=nullptr);
71  }
72 
77  {
78  if (mpLinearSystem)
79  {
80  delete mpLinearSystem;
81  }
82  }
83 
93  virtual void InitialiseForSolve(Vec initialSolution = nullptr);
94 
101  virtual void PrepareForSetupLinearSystem(Vec currentSolution)
102  {
103  }
104 
112  virtual void FinaliseLinearSystem(Vec currentSolution)
113  {
114  }
115 
125  virtual void FollowingSolveLinearSystem(Vec currentSolution)
126  {
127  }
128 
140  virtual void SetupLinearSystem(Vec currentSolution, bool computeMatrix)=0;
141 
146  {
147  return mpLinearSystem;
148  }
149 };
150 
151 template <unsigned ELEMENT_DIM, unsigned SPACE_DIM, unsigned PROBLEM_DIM>
153 {
154  if (this->mpLinearSystem == nullptr)
155  {
156  unsigned preallocation = PROBLEM_DIM * mpMesh->CalculateMaximumNodeConnectivityPerProcess();
157 
158  HeartEventHandler::BeginEvent(HeartEventHandler::COMMUNICATION);
159  if (initialSolution == nullptr)
160  {
161  /*
162  * Static problem, create linear system. The following ensures
163  * all the unknowns for a particular node are on the same processor.
164  */
165  Vec template_vec = mpMesh->GetDistributedVectorFactory()->CreateVec(PROBLEM_DIM);
166 
167  this->mpLinearSystem = new LinearSystem(template_vec, preallocation);
168 
169  PetscTools::Destroy(template_vec);
170  }
171  else
172  {
173  /*
174  * Use the current solution (ie the initial solution)
175  * as the template in the alternative constructor of
176  * LinearSystem. This is to avoid problems with VecScatter.
177  */
178  this->mpLinearSystem = new LinearSystem(initialSolution, preallocation);
179  }
180 
181  HeartEventHandler::EndEvent(HeartEventHandler::COMMUNICATION);
182  }
183 }
184 
185 #endif /*ABSTRACTLINEARPDESOLVER_HPP_*/
AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > * mpMesh
virtual void PrepareForSetupLinearSystem(Vec currentSolution)
virtual void InitialiseForSolve(Vec initialSolution=nullptr)
virtual void FollowingSolveLinearSystem(Vec currentSolution)
static void Destroy(Vec &rVec)
Definition: PetscTools.hpp:352
AbstractLinearPdeSolver(AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh)
virtual void SetupLinearSystem(Vec currentSolution, bool computeMatrix)=0
virtual void FinaliseLinearSystem(Vec currentSolution)