Chaste  Release::2017.1
AbstractHdf5Converter.hpp
1 /*
2 
3 Copyright (c) 2005-2017, University of Oxford.
4 All rights reserved.
5 
6 University of Oxford means the Chancellor, Masters and Scholars of the
7 University of Oxford, having an administrative office at Wellington
8 Square, Oxford OX1 2JD, UK.
9 
10 This file is part of Chaste.
11 
12 Redistribution and use in source and binary forms, with or without
13 modification, are permitted provided that the following conditions are met:
14  * Redistributions of source code must retain the above copyright notice,
15  this list of conditions and the following disclaimer.
16  * Redistributions in binary form must reproduce the above copyright notice,
17  this list of conditions and the following disclaimer in the documentation
18  and/or other materials provided with the distribution.
19  * Neither the name of the University of Oxford nor the names of its
20  contributors may be used to endorse or promote products derived from this
21  software without specific prior written permission.
22 
23 THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
24 AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
25 IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
26 ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDER OR CONTRIBUTORS BE
27 LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
28 CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE
29 GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
30 HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
31 LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT
32 OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
33 
34 */
35 
36 #ifndef ABSTRACTHDF5CONVERTER_HPP_
37 #define ABSTRACTHDF5CONVERTER_HPP_
38 
39 #include <string>
40 #include "AbstractTetrahedralMesh.hpp"
41 #include "OutputFileHandler.hpp"
42 #include "Hdf5DataReader.hpp"
43 
44 
49 template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
51 {
52 private:
59  void GenerateListOfDatasets(const FileFinder& rH5Folder, const std::string& rFileName);
60 
61 protected:
62 
65 
67  boost::shared_ptr<Hdf5DataReader> mpReader;
68 
70  unsigned mNumVariables;
71 
73  std::string mFileBaseName;
74 
81  std::vector<std::string> mDatasetNames;
82 
87 
90 
93 
98  std::string mRelativeSubdirectory;
99 
104  unsigned mPrecision;
105 
113  bool MoveOntoNextDataset();
114 
115 public:
116 
128  AbstractHdf5Converter(const FileFinder& rInputDirectory,
129  const std::string& rFileBaseName,
131  const std::string& rSubdirectoryName,
132  unsigned precision);
133 
137  void WriteInfoFile();
138 
143 
147  std::string GetSubdirectory();
148 };
149 
150 #endif /*ABSTRACTHDF5CONVERTER_HPP_*/
boost::shared_ptr< Hdf5DataReader > mpReader
OutputFileHandler * mpOutputFileHandler
const FileFinder & mrH5Folder
std::vector< std::string > mDatasetNames
AbstractHdf5Converter(const FileFinder &rInputDirectory, const std::string &rFileBaseName, AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, const std::string &rSubdirectoryName, unsigned precision)
AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > * mpMesh
void GenerateListOfDatasets(const FileFinder &rH5Folder, const std::string &rFileName)