BidomainTissue< SPACE_DIM > Class Template Reference

#include <BidomainTissue.hpp>

Inheritance diagram for BidomainTissue< SPACE_DIM >:

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Collaboration diagram for BidomainTissue< SPACE_DIM >:

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List of all members.

Public Member Functions

 BidomainTissue (AbstractCardiacCellFactory< SPACE_DIM > *pCellFactory, bool exchangeHalos=false)
 BidomainTissue (AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > *pMesh)
 ~BidomainTissue ()
const c_matrix< double,
SPACE_DIM, SPACE_DIM > & 
rGetExtracellularConductivityTensor (unsigned elementIndex)

Private Member Functions

template<class Archive>
void serialize (Archive &archive, const unsigned int version)
void CreateExtracellularConductivityTensors ()

Private Attributes

AbstractConductivityTensors
< SPACE_DIM, SPACE_DIM > * 
mpExtracellularConductivityTensors

Friends

class TestBidomainTissue
class boost::serialization::access


Detailed Description

template<unsigned SPACE_DIM>
class BidomainTissue< SPACE_DIM >

BidomainTissue class.

See documentation for AbstractCardiacTissue. This class also has extracellular conductivity tensors.

Definition at line 53 of file BidomainTissue.hpp.


Constructor & Destructor Documentation

template<unsigned SPACE_DIM>
BidomainTissue< SPACE_DIM >::BidomainTissue ( AbstractCardiacCellFactory< SPACE_DIM > *  pCellFactory,
bool  exchangeHalos = false 
) [inline]

Constructor sets up extracellular conductivity tensors.

Parameters:
pCellFactory factory to pass on to the base class constructor
exchangeHalos used in state-variable interpolation. Defaults to false.

Definition at line 38 of file BidomainTissue.cpp.

References BidomainTissue< SPACE_DIM >::CreateExtracellularConductivityTensors().

template<unsigned SPACE_DIM>
BidomainTissue< SPACE_DIM >::BidomainTissue ( AbstractTetrahedralMesh< SPACE_DIM, SPACE_DIM > *  pMesh  )  [inline]

Archiving constructor

Parameters:
pMesh a pointer to the AbstractTetrahedral mesh (recovered from archive).

Definition at line 47 of file BidomainTissue.cpp.

References BidomainTissue< SPACE_DIM >::CreateExtracellularConductivityTensors().

template<unsigned SPACE_DIM>
BidomainTissue< SPACE_DIM >::~BidomainTissue (  )  [inline]


Member Function Documentation

template<unsigned SPACE_DIM>
template<class Archive>
void BidomainTissue< SPACE_DIM >::serialize ( Archive &  archive,
const unsigned int  version 
) [inline, private]

Archive the member variables.

Parameters:
archive 
version 

Definition at line 67 of file BidomainTissue.hpp.

template<unsigned SPACE_DIM>
void BidomainTissue< SPACE_DIM >::CreateExtracellularConductivityTensors (  )  [inline, private]

template<unsigned SPACE_DIM>
const c_matrix< double, SPACE_DIM, SPACE_DIM > & BidomainTissue< SPACE_DIM >::rGetExtracellularConductivityTensor ( unsigned  elementIndex  )  [inline, virtual]

Get the extracellular conductivity tensor for the given element

Parameters:
elementIndex index of the element of interest

Reimplemented from AbstractCardiacTissue< SPACE_DIM >.

Definition at line 169 of file BidomainTissue.cpp.

References AbstractCardiacTissue< SPACE_DIM >::mpConductivityModifier, BidomainTissue< SPACE_DIM >::mpExtracellularConductivityTensors, and AbstractConductivityModifier< ELEMENT_DIM, SPACE_DIM >::rGetModifiedConductivityTensor().


Friends And Related Function Documentation

template<unsigned SPACE_DIM>
friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented from AbstractCardiacTissue< SPACE_DIM >.

Definition at line 59 of file BidomainTissue.hpp.


Member Data Documentation

template<unsigned SPACE_DIM>
AbstractConductivityTensors<SPACE_DIM,SPACE_DIM>* BidomainTissue< SPACE_DIM >::mpExtracellularConductivityTensors [private]


The documentation for this class was generated from the following files:

Generated on Tue May 31 14:32:48 2011 for Chaste by  doxygen 1.5.5