AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM > Class Template Reference

#include <AbstractMonodomainSolver.hpp>

Inheritance diagram for AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >:

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Collaboration diagram for AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >:

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List of all members.

Public Member Functions
void	PrepareForSetupLinearSystem (Vec currentSolution)
virtual void	InitialiseForSolve (Vec initialSolution)
	AbstractMonodomainSolver (AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *pMesh, MonodomainTissue< ELEMENT_DIM, SPACE_DIM > *pTissue, BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, 1 > *pBoundaryConditions, unsigned numQuadPoints=2)
virtual	~AbstractMonodomainSolver ()
Protected Attributes
BoundaryConditionsContainer < ELEMENT_DIM, SPACE_DIM, 1 > *	mpBoundaryConditions
MonodomainTissue< ELEMENT_DIM, SPACE_DIM > *	mpMonodomainTissue
MonodomainAssembler < ELEMENT_DIM, SPACE_DIM > *	mpMonodomainAssembler
unsigned	mNumQuadPoints

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Detailed Description

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>
class AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >

Abstract Monodomain class containing some common functionality Inherits from AbstractDynamicLinearPdeSolver so child classes must implement SetupLinearSystem()

Definition at line 43 of file AbstractMonodomainSolver.hpp.

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Constructor & Destructor Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::AbstractMonodomainSolver	(	AbstractTetrahedralMesh< ELEMENT_DIM, SPACE_DIM > *	pMesh,
		MonodomainTissue< ELEMENT_DIM, SPACE_DIM > *	pTissue,
		BoundaryConditionsContainer< ELEMENT_DIM, SPACE_DIM, 1 > *	pBoundaryConditions,
		unsigned	numQuadPoints = 2
	)			[inline]

Constructor

Parameters:

	pMesh	pointer to the mesh
	pTissue	pointer to the tissue
	pBoundaryConditions	pointer to the boundary conditions
	numQuadPoints	number of quadrature points (defaults to 2)

Definition at line 105 of file AbstractMonodomainSolver.cpp.

References AbstractDynamicLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, 1 >::mMatrixIsConstant, and AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::mpMonodomainAssembler.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::~AbstractMonodomainSolver

(

)

[inline, virtual]

Destructor - just deletes assembler

Definition at line 124 of file AbstractMonodomainSolver.cpp.

References AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::mpMonodomainAssembler.

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Member Function Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::PrepareForSetupLinearSystem

(

Vec

currentSolution

)

[inline, virtual]

Overloaded PrepareForSetupLinearSystem() methods which gets the cell models to solve themselves

Parameters:

currentSolution

solution at current time

Reimplemented from AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >.

Definition at line 66 of file AbstractMonodomainSolver.cpp.

References PdeSimulationTime::GetPdeTimeStep(), PdeSimulationTime::GetTime(), and AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::mpMonodomainTissue.

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

void AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::InitialiseForSolve

(

Vec

initialSolution

)

[inline, virtual]

Overloaded InitialiseForSolve

Parameters:

initialSolution

initial solution

Reimplemented from AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >.

Reimplemented in MatrixBasedMonodomainSolver< ELEMENT_DIM, SPACE_DIM >.

Definition at line 76 of file AbstractMonodomainSolver.cpp.

References AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::InitialiseForSolve(), HeartConfig::Instance(), AbstractLinearPdeSolver< ELEMENT_DIM, SPACE_DIM, PROBLEM_DIM >::mpLinearSystem, LinearSystem::SetAbsoluteTolerance(), LinearSystem::SetKspType(), LinearSystem::SetMatrixIsSymmetric(), LinearSystem::SetPcType(), LinearSystem::SetRelativeTolerance(), and LinearSystem::SetUseFixedNumberIterations().

Referenced by MatrixBasedMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::InitialiseForSolve().

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Member Data Documentation

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

BoundaryConditionsContainer<ELEMENT_DIM,SPACE_DIM,1>* AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::mpBoundaryConditions [protected]

Boundary conditions

Definition at line 48 of file AbstractMonodomainSolver.hpp.

Referenced by MatrixBasedMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::SetupLinearSystem(), and BasicMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::SetupLinearSystem().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

MonodomainTissue<ELEMENT_DIM,SPACE_DIM>* AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::mpMonodomainTissue [protected]

Monodomain tissue class (collection of cells, and conductivities)

Definition at line 51 of file AbstractMonodomainSolver.hpp.

Referenced by MatrixBasedMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::MatrixBasedMonodomainSolver(), AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::PrepareForSetupLinearSystem(), MatrixBasedMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::SetupLinearSystem(), and BasicMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::SetupLinearSystem().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

MonodomainAssembler<ELEMENT_DIM,SPACE_DIM>* AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::mpMonodomainAssembler [protected]

The monodomain assembler, used to set up the LHS matrix; and RHS vector for BasicMonodomainSolver (but not MatrixBasedMonodomainSolver)

Definition at line 57 of file AbstractMonodomainSolver.hpp.

Referenced by AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::AbstractMonodomainSolver(), MatrixBasedMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::SetupLinearSystem(), BasicMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::SetupLinearSystem(), and AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::~AbstractMonodomainSolver().

template<unsigned ELEMENT_DIM, unsigned SPACE_DIM>

unsigned AbstractMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::mNumQuadPoints [protected]

Number of quadrature points per dimension (only saved so it can be passed to the assembler

Definition at line 63 of file AbstractMonodomainSolver.hpp.

Referenced by MatrixBasedMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::MatrixBasedMonodomainSolver(), MatrixBasedMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::SetupLinearSystem(), and BasicMonodomainSolver< ELEMENT_DIM, SPACE_DIM >::SetupLinearSystem().

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The documentation for this class was generated from the following files:

• heart/src/solver/electrics/AbstractMonodomainSolver.hpp
• heart/src/solver/electrics/AbstractMonodomainSolver.cpp