CmguiDeformedSolutionsWriter< DIM > Class Template Reference

#include <CmguiDeformedSolutionsWriter.hpp>

Inherits CmguiMeshWriter< DIM, DIM >.

Collaboration diagram for CmguiDeformedSolutionsWriter< DIM >:
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List of all members.

Public Member Functions

 CmguiDeformedSolutionsWriter (std::string outputDirectory, std::string baseName, QuadraticMesh< DIM > &rQuadraticMesh)
void WriteInitialMesh ()
void WriteDeformationPositions (std::vector< c_vector< double, DIM > > &rDeformedPositions, unsigned counter)
void WriteCmguiScript ()
void ConvertOutput (std::string inputDirectory, std::string inputFileBaseName, unsigned finalCounter)

Private Member Functions

unsigned GetNumNodes ()

Private Attributes

QuadraticMesh< DIM > * mpQuadraticMesh
unsigned mFinalCounter

Detailed Description

template<unsigned DIM>
class CmguiDeformedSolutionsWriter< DIM >

CmguiDeformedSolutionsWriter

A class for writing a mesh, and solutions from a solid mechanics (ie deformed meshes) problem, in Cmgui output format.

Inherits from CmguiMeshWriter

Definition at line 46 of file CmguiDeformedSolutionsWriter.hpp.

Constructor & Destructor Documentation

template<unsigned DIM>
CmguiDeformedSolutionsWriter< DIM >::CmguiDeformedSolutionsWriter ( std::string  outputDirectory,
std::string  baseName,
QuadraticMesh< DIM > &  rQuadraticMesh 
) [inline]

Constructor

Parameters:
outputDirectory The output directory for the Cmgui files
baseName The base name for the Cmgui output files - the files written will be [basename_0.exnode, [basename]_0.exelem; [basename]_1.exnode, [basename]_2.exnode, ..
rQuadraticMesh The quadratic mesh used in the mechanics simulation

Definition at line 33 of file CmguiDeformedSolutionsWriter.cpp.

Member Function Documentation

template<unsigned DIM>
void CmguiDeformedSolutionsWriter< DIM >::ConvertOutput ( std::string  inputDirectory,
std::string  inputFileBaseName,
unsigned  finalCounter 
) [inline]

For a simulation that has already been run, convert the chaste output to cmgui format.

Parameters:
inputDirectory The directory the chaste output is in
inputFileBaseName The base name for the chaste output
finalCounter The final counter, ie the value N for the final file [basename]_N.nodes. The first file is assumed to be [basename]_0.nodes. The files [basename]_0.nodes up to [basename]_N.nodes will be converted to cmgui format and put in the output directory given in the constructor.

Definition at line 96 of file CmguiDeformedSolutionsWriter.cpp.

References CmguiDeformedSolutionsWriter< DIM >::mpQuadraticMesh, CmguiDeformedSolutionsWriter< DIM >::WriteCmguiScript(), CmguiDeformedSolutionsWriter< DIM >::WriteDeformationPositions(), and CmguiDeformedSolutionsWriter< DIM >::WriteInitialMesh().

template<unsigned DIM>
unsigned CmguiDeformedSolutionsWriter< DIM >::GetNumNodes (  )  [inline, private, virtual]

Overridden GetNumNodes() just returns the number of vertices in the quadratic mesh, since (currently - perhaps not in the future) the cmgui element file assumes linear interpolation in the elements and therefore we don't need to write the internal nodes

Reimplemented from AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >.

Definition at line 66 of file CmguiDeformedSolutionsWriter.hpp.

References CmguiDeformedSolutionsWriter< DIM >::mpQuadraticMesh.

template<unsigned DIM>
void CmguiDeformedSolutionsWriter< DIM >::WriteCmguiScript (  )  [inline]

Writes a small cmgui script called LoadSolutions.com, for loading the output that has been written. Assumes the output was solution_0.exnode .. solution_N.exnode, where N is the counter that was given in the last call to WriteDeformationPositions()

Definition at line 83 of file CmguiDeformedSolutionsWriter.cpp.

References AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mBaseName, CmguiDeformedSolutionsWriter< DIM >::mFinalCounter, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mpOutputFileHandler, and OutputFileHandler::OpenOutputFile().

Referenced by CmguiDeformedSolutionsWriter< DIM >::ConvertOutput(), and CardiacElectroMechanicsProblem< DIM >::Solve().

template<unsigned DIM>
void CmguiDeformedSolutionsWriter< DIM >::WriteDeformationPositions ( std::vector< c_vector< double, DIM > > &  rDeformedPositions,
unsigned  counter 
) [inline]

Write [basename]_i.exnode using the given deformed positions

Parameters:
rDeformedPositions std::vector of deformed positions to be used, must have size equal to number of nodes in the mesh
counter the value "i" in "[basename]_i.exnode" to be used.

Definition at line 52 of file CmguiDeformedSolutionsWriter.cpp.

References AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mBaseName, CmguiDeformedSolutionsWriter< DIM >::mFinalCounter, AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mpOutputFileHandler, CmguiDeformedSolutionsWriter< DIM >::mpQuadraticMesh, OutputFileHandler::OpenOutputFile(), and CmguiMeshWriter< DIM, DIM >::WriteNodeFileHeader().

Referenced by CmguiDeformedSolutionsWriter< DIM >::ConvertOutput(), and CardiacElectroMechanicsProblem< DIM >::Solve().

template<unsigned DIM>
void CmguiDeformedSolutionsWriter< DIM >::WriteInitialMesh (  )  [inline]

Write [basename]_0.exnode, [basename]_0.exelem using the quadratic mesh

Definition at line 43 of file CmguiDeformedSolutionsWriter.cpp.

References AbstractMeshWriter< ELEMENT_DIM, SPACE_DIM >::mBaseName, CmguiDeformedSolutionsWriter< DIM >::mpQuadraticMesh, and AbstractTetrahedralMeshWriter< ELEMENT_DIM, SPACE_DIM >::WriteFilesUsingMesh().

Referenced by CmguiDeformedSolutionsWriter< DIM >::ConvertOutput(), and CardiacElectroMechanicsProblem< DIM >::Solve().

Member Data Documentation

template<unsigned DIM>
unsigned CmguiDeformedSolutionsWriter< DIM >::mFinalCounter [private]

A counter is given whenever WriteDeformationPositions() is called, this variable stores the last one used

Definition at line 59 of file CmguiDeformedSolutionsWriter.hpp.

Referenced by CmguiDeformedSolutionsWriter< DIM >::WriteCmguiScript(), and CmguiDeformedSolutionsWriter< DIM >::WriteDeformationPositions().

template<unsigned DIM>
QuadraticMesh<DIM>* CmguiDeformedSolutionsWriter< DIM >::mpQuadraticMesh [private]

The quadratic mesh used in the mechanics simulation. solution_0.exnode and solution_0.exelem (the only exelem file written) will be written using this mesh

Definition at line 53 of file CmguiDeformedSolutionsWriter.hpp.

Referenced by CmguiDeformedSolutionsWriter< DIM >::ConvertOutput(), CmguiDeformedSolutionsWriter< DIM >::GetNumNodes(), CmguiDeformedSolutionsWriter< DIM >::WriteDeformationPositions(), and CmguiDeformedSolutionsWriter< DIM >::WriteInitialMesh().

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