RandomCellKiller< DIM > Class Template Reference

#include <RandomCellKiller.hpp>

Inheritance diagram for RandomCellKiller< DIM >:

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Collaboration diagram for RandomCellKiller< DIM >:

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List of all members.

Public Member Functions

 RandomCellKiller (AbstractTissue< DIM > *pTissue, double probabilityOfDeathInAnHour)
double GetDeathProbabilityInAnHour () const
void TestAndLabelSingleCellForApoptosis (TissueCell &rCell)
void TestAndLabelCellsForApoptosisOrDeath ()

Private Member Functions

template<class Archive>
void serialize (Archive &archive, const unsigned int version)

Private Attributes

double mProbabilityOfDeathInAnHour

Friends

class boost::serialization::access


Detailed Description

template<unsigned DIM>
class RandomCellKiller< DIM >

A cell killer that randomly kills cells based on the user set probability.

The probability passed into the constructor will be the probability of any cell dying whenever TestAndLabelCellsForApoptosis() is called.

Note this does take into account timesteps - the input probability is the probability that in an hour's worth of trying, the cell killer will have successfully killed a given cell. In the method TestAndLabelSingleCellForApoptosis() this probability is used to calculate the probability that the cell is killed at a given time step.

Definition at line 51 of file RandomCellKiller.hpp.


Constructor & Destructor Documentation

template<unsigned DIM>
RandomCellKiller< DIM >::RandomCellKiller ( AbstractTissue< DIM > *  pTissue,
double  probabilityOfDeathInAnHour 
) [inline]

Default constructor.

Parameters:
pTissue pointer to the tissue
probabilityOfDeathInAnHour probability that a cell is labelled for apoptosis in one hour's worth of trying

Definition at line 32 of file RandomCellKiller.cpp.

References RandomCellKiller< DIM >::mProbabilityOfDeathInAnHour.


Member Function Documentation

template<unsigned DIM>
template<class Archive>
void RandomCellKiller< DIM >::serialize ( Archive &  archive,
const unsigned int  version 
) [inline, private]

Archive the object and its member variables.

Serialization of singleton objects must be done with care. Before the object is serialized via a pointer, it *MUST* be serialized directly, or an assertion will trip when a second instance of the class is created on de-serialization.

Parameters:
archive the archive
version the current version of this class

Reimplemented from AbstractCellKiller< DIM >.

Definition at line 75 of file RandomCellKiller.hpp.

References RandomNumberGenerator::Instance().

template<unsigned DIM>
double RandomCellKiller< DIM >::GetDeathProbabilityInAnHour (  )  const [inline]

Returns:
mProbabilityOfDeathInAnHour.

Definition at line 43 of file RandomCellKiller.cpp.

References RandomCellKiller< DIM >::mProbabilityOfDeathInAnHour.

template<unsigned DIM>
void RandomCellKiller< DIM >::TestAndLabelSingleCellForApoptosis ( TissueCell rCell  )  [inline]

template<unsigned DIM>
void RandomCellKiller< DIM >::TestAndLabelCellsForApoptosisOrDeath (  )  [inline, virtual]

Loop over cells and start apoptosis randomly, based on the user-set probability

Implements AbstractCellKiller< DIM >.

Definition at line 62 of file RandomCellKiller.cpp.

References AbstractTissue< DIM >::Begin(), AbstractTissue< DIM >::End(), AbstractCellKiller< DIM >::mpTissue, and RandomCellKiller< DIM >::TestAndLabelSingleCellForApoptosis().


Friends And Related Function Documentation

template<unsigned DIM>
friend class boost::serialization::access [friend]

Needed for serialization.

Reimplemented from AbstractCellKiller< DIM >.

Definition at line 62 of file RandomCellKiller.hpp.


Member Data Documentation

template<unsigned DIM>
double RandomCellKiller< DIM >::mProbabilityOfDeathInAnHour [private]

Probability that in an hour's worth of trying, the cell killer will have successfully killed a given cell.

Definition at line 59 of file RandomCellKiller.hpp.

Referenced by RandomCellKiller< DIM >::GetDeathProbabilityInAnHour(), RandomCellKiller< DIM >::RandomCellKiller(), and RandomCellKiller< DIM >::TestAndLabelSingleCellForApoptosis().


The documentation for this class was generated from the following files:

Generated on Tue Aug 4 16:11:40 2009 for Chaste by  doxygen 1.5.5