HeartGeometryInformation< SPACE_DIM > Class Template Reference

#include <HeartGeometryInformation.hpp>

Collaboration diagram for HeartGeometryInformation< SPACE_DIM >:

List of all members.

Public Member Functions

HeartGeometryInformation (TetrahedralMesh< SPACE_DIM, SPACE_DIM > &rMesh, std::string mEpiFile, std::string mEndoFile)

HeartGeometryInformation (TetrahedralMesh< SPACE_DIM, SPACE_DIM > &rMesh, std::string mEpiFile, std::string mLVFile, std::string mRVFile)

HeartGeometryInformation (TetrahedralMesh< SPACE_DIM, SPACE_DIM > &rMesh, std::vector< unsigned > &rNodesAtEpi, std::vector< unsigned > &rNodesAtEndo)

HeartGeometryInformation (TetrahedralMesh< SPACE_DIM, SPACE_DIM > &rMesh, std::vector< unsigned > &rNodesAtEpi, std::vector< unsigned > &rNodesAtLv, std::vector< unsigned > &rNodesAtRv)

HeartRegionType GetHeartRegion (unsigned nodeIndex) const

std::vector< double > & rGetDistanceMapEpicardium ()

std::vector< double > & rGetDistanceMapEndocardium ()

std::vector< double > & rGetDistanceMapRightVentricle ()

std::vector< double > & rGetDistanceMapLeftVentricle ()

const std::vector< unsigned > & rGetNodesOnEpiSurface ()

const std::vector< unsigned > & rGetNodesOnEndoSurface ()

const std::vector< unsigned > & rGetNodesOnLVSurface ()

const std::vector< unsigned > & rGetNodesOnRVSurface ()

const std::vector
< HeartLayerType > & rGetLayerForEachNode ()

double CalculateRelativeWallPosition (unsigned nodeIndex)

void DetermineLayerForEachNode (double epiFraction, double endoFraction)

void WriteLayerForEachNode (std::string outputDir, std::string file)

Private Member Functions

void GetNodesAtSurface (const std::string &surfaceFile, std::vector< unsigned > &rSurfaceNodes) const

void ProcessLine (const std::string &line, std::set< unsigned > &surfaceNodeIndexSet) const

double GetDistanceToEndo (unsigned nodeIndex)

double GetDistanceToEpi (unsigned nodeIndex)

Private Attributes

std::vector< unsigned > mEpiSurface

std::vector< unsigned > mEndoSurface

std::vector< unsigned > mLVSurface

std::vector< unsigned > mRVSurface

TetrahedralMesh< SPACE_DIM,
SPACE_DIM > & mrMesh

std::vector< double > mDistMapEpicardium

std::vector< double > mDistMapEndocardium

std::vector< double > mDistMapRightVentricle

std::vector< double > mDistMapLeftVentricle

unsigned mNumberOfSurfacesProvided

std::vector< HeartLayerType > mLayerForEachNode

Static Private Attributes

static const double LEFT_SEPTUM_SIZE = 2.0/3.0

static const double RIGHT_SEPTUM_SIZE = 1.0/3.0

Detailed Description

template<unsigned SPACE_DIM>
class HeartGeometryInformation< SPACE_DIM >

This class provides a method to calculate the relative position of a node with respect to two (or three) given surfaces

Definition at line 52 of file HeartGeometryInformation.hpp.

Constructor & Destructor Documentation

template<unsigned SPACE_DIM>

HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation	(	TetrahedralMesh< SPACE_DIM, SPACE_DIM > &	rMesh,
		std::string	mEpiFile,
		std::string	mEndoFile
	)			`[inline]`

Constructor for a two surface mesh

Parameters:

	rMesh,:	reference to the mesh
	mEpiFile,:	file of elements on the epicardial surface
	mEndoFile,:	file of elements on the endocardial surface

Definition at line 47 of file HeartGeometryInformation.cpp.

References DistanceMapCalculator< SPACE_DIM >::ComputeDistanceMap(), HeartGeometryInformation< SPACE_DIM >::GetNodesAtSurface(), HeartGeometryInformation< SPACE_DIM >::mDistMapEndocardium, HeartGeometryInformation< SPACE_DIM >::mDistMapEpicardium, HeartGeometryInformation< SPACE_DIM >::mEndoSurface, HeartGeometryInformation< SPACE_DIM >::mEpiSurface, HeartGeometryInformation< SPACE_DIM >::mNumberOfSurfacesProvided, and HeartGeometryInformation< SPACE_DIM >::mrMesh.

template<unsigned SPACE_DIM>

HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation	(	TetrahedralMesh< SPACE_DIM, SPACE_DIM > &	rMesh,
		std::string	mEpiFile,
		std::string	mLVFile,
		std::string	mRVFile
	)			`[inline]`

Constructor for a three surface mesh

Parameters:

	rMesh,:	reference to the mesh
	mEpiFile,:	file of elements on the epicardial surface
	mRVFile,:	file of elements on the endocardial right ventricular surface
	mLVFile,:	file of elements on the endocardial left ventricular surface

Definition at line 66 of file HeartGeometryInformation.cpp.

template<unsigned SPACE_DIM>

HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation	(	TetrahedralMesh< SPACE_DIM, SPACE_DIM > &	rMesh,
		std::vector< unsigned > &	rNodesAtEpi,
		std::vector< unsigned > &	rNodesAtEndo
	)			`[inline]`

Constructor which takes in the nodes indices for each surface (mainly for testing or simple geometries) - 2 surface version

Parameters:

	rMesh,:	reference to the mesh
	rNodesAtEpi,:	indices of the nodes in the epicardial surface
	rNodesAtEndo,:	indices of the nodes in the endocardial surface

Definition at line 88 of file HeartGeometryInformation.cpp.

References DistanceMapCalculator< SPACE_DIM >::ComputeDistanceMap(), HeartGeometryInformation< SPACE_DIM >::mDistMapEndocardium, HeartGeometryInformation< SPACE_DIM >::mDistMapEpicardium, HeartGeometryInformation< SPACE_DIM >::mNumberOfSurfacesProvided, and HeartGeometryInformation< SPACE_DIM >::mrMesh.

template<unsigned SPACE_DIM>

HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation	(	TetrahedralMesh< SPACE_DIM, SPACE_DIM > &	rMesh,
		std::vector< unsigned > &	rNodesAtEpi,
		std::vector< unsigned > &	rNodesAtLv,
		std::vector< unsigned > &	rNodesAtRv
	)			`[inline]`

Constructor which takes in the nodes indices for each surface (mainly for testing or simple geometries)

Parameters:

	rMesh,:	reference to the mesh
	rNodesAtEpi,:	indices of the nodes in the epicardial surface
	rNodesAtLv,:	indices of the nodes in the lv surface
	rNodesAtRv,:	indices of the nodes in the rv surface

Definition at line 104 of file HeartGeometryInformation.cpp.

References DistanceMapCalculator< SPACE_DIM >::ComputeDistanceMap(), HeartGeometryInformation< SPACE_DIM >::mDistMapEpicardium, HeartGeometryInformation< SPACE_DIM >::mDistMapLeftVentricle, HeartGeometryInformation< SPACE_DIM >::mDistMapRightVentricle, HeartGeometryInformation< SPACE_DIM >::mNumberOfSurfacesProvided, and HeartGeometryInformation< SPACE_DIM >::mrMesh.

Member Function Documentation

template<unsigned SPACE_DIM>

void HeartGeometryInformation< SPACE_DIM >::GetNodesAtSurface	(	const std::string &	surfaceFile,
		std::vector< unsigned > &	rSurfaceNodes
	)			const `[inline, private]`

Takes in a file of all the surface elements on ONE PARTICULAR surface of the mesh (eg the right ventricular endo-cardial surface) and collects all the nodes on that surface in one vector

Parameters:

	surfaceFile	The surface file
	rSurfaceNodes	The returned vector of nodes indices on this surface

Definition at line 146 of file HeartGeometryInformation.cpp.

References HeartGeometryInformation< SPACE_DIM >::ProcessLine().

Referenced by HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation().

template<unsigned SPACE_DIM>

void HeartGeometryInformation< SPACE_DIM >::ProcessLine	(	const std::string &	line,
		std::set< unsigned > &	surfaceNodeIndexSet
	)			const `[inline, private]`

Helper function for GetNodesAtSurface

Parameters:

	line	A line in a surface file
	surfaceNodeIndexSet	The nodes in the element corresponding to this line

Definition at line 121 of file HeartGeometryInformation.cpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetNodesAtSurface().

template<unsigned SPACE_DIM>

double HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo ( unsigned nodeIndex ) [inline, private]

Helper method to calculate the distance between the node and the Endocardial surface as defined to be the closest surface to the node out of left ventricle and right ventricle.

Parameters:

nodeIndex

is the index of the node in the mesh

Returns:: the distance

Definition at line 221 of file HeartGeometryInformation.cpp.

References HeartGeometryInformation< SPACE_DIM >::GetHeartRegion(), HeartRegionCode::LEFT_SEPTUM, HeartRegionCode::LEFT_VENTRICLE_SURFACE, HeartRegionCode::LEFT_VENTRICLE_WALL, HeartGeometryInformation< SPACE_DIM >::mDistMapEndocardium, HeartGeometryInformation< SPACE_DIM >::mDistMapEpicardium, HeartGeometryInformation< SPACE_DIM >::mDistMapLeftVentricle, HeartGeometryInformation< SPACE_DIM >::mDistMapRightVentricle, HeartGeometryInformation< SPACE_DIM >::mNumberOfSurfacesProvided, HeartRegionCode::RIGHT_SEPTUM, HeartRegionCode::RIGHT_VENTRICLE_SURFACE, HeartRegionCode::RIGHT_VENTRICLE_WALL, and HeartRegionCode::UNKNOWN.

Referenced by HeartGeometryInformation< SPACE_DIM >::CalculateRelativeWallPosition().

template<unsigned SPACE_DIM>

double HeartGeometryInformation< SPACE_DIM >::GetDistanceToEpi ( unsigned nodeIndex ) [inline, private]

Helper method to calculate the distance between the node and the Epicardial surface

Parameters:

nodeIndex

is the index of the node in the mesh

Returns:: the distance

\ to do: there needs to be the logic for the septum as in Streeter

Definition at line 276 of file HeartGeometryInformation.cpp.

References HeartGeometryInformation< SPACE_DIM >::mDistMapEpicardium.

Referenced by HeartGeometryInformation< SPACE_DIM >::CalculateRelativeWallPosition().

template<unsigned SPACE_DIM>

HeartRegionType HeartGeometryInformation< SPACE_DIM >::GetHeartRegion ( unsigned nodeIndex ) const [inline]

Parameters:

nodeIndex

index is the index of the node in the mesh

Returns:: the region type based on the relative distances to epi and endocardial surfaces

Definition at line 188 of file HeartGeometryInformation.cpp.

References HeartRegionCode::LEFT_SEPTUM, HeartGeometryInformation< SPACE_DIM >::LEFT_SEPTUM_SIZE, HeartRegionCode::LEFT_VENTRICLE_WALL, HeartGeometryInformation< SPACE_DIM >::mDistMapEpicardium, HeartGeometryInformation< SPACE_DIM >::mDistMapLeftVentricle, HeartGeometryInformation< SPACE_DIM >::mDistMapRightVentricle, HeartRegionCode::RIGHT_SEPTUM, HeartRegionCode::RIGHT_VENTRICLE_WALL, and HeartRegionCode::UNKNOWN.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo().

template<unsigned SPACE_DIM>

std::vector<double>& HeartGeometryInformation< SPACE_DIM >::rGetDistanceMapEpicardium ( ) [inline]

Returns:: the distance map to the epicardium

Definition at line 189 of file HeartGeometryInformation.hpp.

References HeartGeometryInformation< SPACE_DIM >::mDistMapEpicardium.

template<unsigned SPACE_DIM>

std::vector<double>& HeartGeometryInformation< SPACE_DIM >::rGetDistanceMapEndocardium ( ) [inline]

Returns:: the distance map to the endocardium

Definition at line 198 of file HeartGeometryInformation.hpp.

References HeartGeometryInformation< SPACE_DIM >::mDistMapEndocardium, and HeartGeometryInformation< SPACE_DIM >::mNumberOfSurfacesProvided.

template<unsigned SPACE_DIM>

std::vector<double>& HeartGeometryInformation< SPACE_DIM >::rGetDistanceMapRightVentricle ( ) [inline]

Returns:: the distance map to the right ventricle

Definition at line 208 of file HeartGeometryInformation.hpp.

References HeartGeometryInformation< SPACE_DIM >::mDistMapRightVentricle, and HeartGeometryInformation< SPACE_DIM >::mNumberOfSurfacesProvided.

template<unsigned SPACE_DIM>

std::vector<double>& HeartGeometryInformation< SPACE_DIM >::rGetDistanceMapLeftVentricle ( ) [inline]

Returns:: the distance map to the left ventricle

Definition at line 218 of file HeartGeometryInformation.hpp.

References HeartGeometryInformation< SPACE_DIM >::mDistMapLeftVentricle, and HeartGeometryInformation< SPACE_DIM >::mNumberOfSurfacesProvided.

template<unsigned SPACE_DIM>

const std::vector<unsigned>& HeartGeometryInformation< SPACE_DIM >::rGetNodesOnEpiSurface ( ) [inline]

Get the nodes on the epicardial surface

Definition at line 225 of file HeartGeometryInformation.hpp.

References HeartGeometryInformation< SPACE_DIM >::mEpiSurface.

template<unsigned SPACE_DIM>

const std::vector<unsigned>& HeartGeometryInformation< SPACE_DIM >::rGetNodesOnEndoSurface ( ) [inline]

Get the nodes on the endocardial surface

Definition at line 232 of file HeartGeometryInformation.hpp.

References HeartGeometryInformation< SPACE_DIM >::mEndoSurface, and HeartGeometryInformation< SPACE_DIM >::mNumberOfSurfacesProvided.

template<unsigned SPACE_DIM>

const std::vector<unsigned>& HeartGeometryInformation< SPACE_DIM >::rGetNodesOnLVSurface ( ) [inline]

Get the nodes on the endocardial left ventricular surface

Definition at line 239 of file HeartGeometryInformation.hpp.

References HeartGeometryInformation< SPACE_DIM >::mLVSurface, and HeartGeometryInformation< SPACE_DIM >::mNumberOfSurfacesProvided.

template<unsigned SPACE_DIM>

const std::vector<unsigned>& HeartGeometryInformation< SPACE_DIM >::rGetNodesOnRVSurface ( ) [inline]

Get the nodes on the endocardial right ventricular surface

Definition at line 246 of file HeartGeometryInformation.hpp.

References HeartGeometryInformation< SPACE_DIM >::mNumberOfSurfacesProvided, and HeartGeometryInformation< SPACE_DIM >::mRVSurface.

template<unsigned SPACE_DIM>

const std::vector<HeartLayerType>& HeartGeometryInformation< SPACE_DIM >::rGetLayerForEachNode ( ) [inline]

Get the layer for every node in the mesh.

Definition at line 255 of file HeartGeometryInformation.hpp.

References HeartGeometryInformation< SPACE_DIM >::mLayerForEachNode.

template<unsigned SPACE_DIM>

double HeartGeometryInformation< SPACE_DIM >::CalculateRelativeWallPosition ( unsigned nodeIndex ) [inline]

Calculates the relative position within the wall thickness (normalised to [0,1])

Parameters:

nodeIndex

index is the index of the node in the mesh

Returns:: the relative position

Definition at line 283 of file HeartGeometryInformation.cpp.

References HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), and HeartGeometryInformation< SPACE_DIM >::GetDistanceToEpi().

Referenced by HeartGeometryInformation< SPACE_DIM >::DetermineLayerForEachNode().

template<unsigned SPACE_DIM>

void HeartGeometryInformation< SPACE_DIM >::DetermineLayerForEachNode	(	double	epiFraction,
		double	endoFraction
	)			`[inline]`

Compute which layer (endocardial, midmyocardial or epicardial) each node is in

Parameters:

	epiFraction	is the fraction of wall designed to be epicardial layer
	endoFraction	is the fraction of wall designed to be endocardial layer

Definition at line 307 of file HeartGeometryInformation.cpp.

References HeartGeometryInformation< SPACE_DIM >::CalculateRelativeWallPosition(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), HeartGeometryInformation< SPACE_DIM >::mLayerForEachNode, and HeartGeometryInformation< SPACE_DIM >::mrMesh.

template<unsigned SPACE_DIM>

void HeartGeometryInformation< SPACE_DIM >::WriteLayerForEachNode	(	std::string	outputDir,
		std::string	file
	)			`[inline]`

Write the layer for each node. DetermineLayerForEachNode() must have been called first.

Parameters:

	outputDir	Output directory - note not cleaned
	file	Output file

Definition at line 334 of file HeartGeometryInformation.cpp.

References PetscTools::AmMaster(), PetscTools::Barrier(), AbstractMesh< ELEMENT_DIM, SPACE_DIM >::GetNumNodes(), HeartGeometryInformation< SPACE_DIM >::mLayerForEachNode, HeartGeometryInformation< SPACE_DIM >::mrMesh, and OutputFileHandler::OpenOutputFile().

Member Data Documentation

template<unsigned SPACE_DIM>

const double HeartGeometryInformation< SPACE_DIM >::LEFT_SEPTUM_SIZE = 2.0/3.0 [inline, static, private]

Area of the septum considered to belong to the left septum (relative to 1)

Definition at line 57 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetHeartRegion().

template<unsigned SPACE_DIM>

const double HeartGeometryInformation< SPACE_DIM >::RIGHT_SEPTUM_SIZE = 1.0/3.0 [inline, static, private]

Area of the septum considered to belong to the right septum (relative to 1)

Definition at line 59 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>

std::vector<unsigned> HeartGeometryInformation< SPACE_DIM >::mEpiSurface [private]

The nodes on the epicardial surface

Definition at line 62 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< SPACE_DIM >::rGetNodesOnEpiSurface().

template<unsigned SPACE_DIM>

std::vector<unsigned> HeartGeometryInformation< SPACE_DIM >::mEndoSurface [private]

The nodes on the endocardial surface (only used in the 2 surface case)

Definition at line 65 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< SPACE_DIM >::rGetNodesOnEndoSurface().

template<unsigned SPACE_DIM>

std::vector<unsigned> HeartGeometryInformation< SPACE_DIM >::mLVSurface [private]

The nodes on the endocardial left ventricular surface (only used in the 3 surface case)

Definition at line 68 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< SPACE_DIM >::rGetNodesOnLVSurface().

template<unsigned SPACE_DIM>

std::vector<unsigned> HeartGeometryInformation< SPACE_DIM >::mRVSurface [private]

The nodes on the endocardial right ventricular surface (only used in the 3 surface case)

Definition at line 71 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< SPACE_DIM >::rGetNodesOnRVSurface().

template<unsigned SPACE_DIM>

TetrahedralMesh<SPACE_DIM,SPACE_DIM>& HeartGeometryInformation< SPACE_DIM >::mrMesh [private]

The mesh of the problem

Definition at line 108 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::DetermineLayerForEachNode(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< SPACE_DIM >::WriteLayerForEachNode().

template<unsigned SPACE_DIM>

std::vector<double> HeartGeometryInformation< SPACE_DIM >::mDistMapEpicardium [private]

Vector to store the distance map to epicardium

Definition at line 111 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), HeartGeometryInformation< SPACE_DIM >::GetDistanceToEpi(), HeartGeometryInformation< SPACE_DIM >::GetHeartRegion(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< SPACE_DIM >::rGetDistanceMapEpicardium().

template<unsigned SPACE_DIM>

std::vector<double> HeartGeometryInformation< SPACE_DIM >::mDistMapEndocardium [private]

Vector to store the distance map to endocardium

Definition at line 114 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< SPACE_DIM >::rGetDistanceMapEndocardium().

template<unsigned SPACE_DIM>

std::vector<double> HeartGeometryInformation< SPACE_DIM >::mDistMapRightVentricle [private]

Vector to store the distance map to the right ventricle surface

Definition at line 117 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), HeartGeometryInformation< SPACE_DIM >::GetHeartRegion(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< SPACE_DIM >::rGetDistanceMapRightVentricle().

template<unsigned SPACE_DIM>

std::vector<double> HeartGeometryInformation< SPACE_DIM >::mDistMapLeftVentricle [private]

Vector to store the distance map to the left ventricle surface

Definition at line 120 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::GetDistanceToEndo(), HeartGeometryInformation< SPACE_DIM >::GetHeartRegion(), HeartGeometryInformation< SPACE_DIM >::HeartGeometryInformation(), and HeartGeometryInformation< SPACE_DIM >::rGetDistanceMapLeftVentricle().

template<unsigned SPACE_DIM>

unsigned HeartGeometryInformation< SPACE_DIM >::mNumberOfSurfacesProvided [private]

Flag used to tell the methods whether two or three surfaces have been supplied

Definition at line 123 of file HeartGeometryInformation.hpp.

template<unsigned SPACE_DIM>

std::vector<HeartLayerType> HeartGeometryInformation< SPACE_DIM >::mLayerForEachNode [private]

Vector to store the layer for each node

Definition at line 126 of file HeartGeometryInformation.hpp.

Referenced by HeartGeometryInformation< SPACE_DIM >::DetermineLayerForEachNode(), HeartGeometryInformation< SPACE_DIM >::rGetLayerForEachNode(), and HeartGeometryInformation< SPACE_DIM >::WriteLayerForEachNode().

The documentation for this class was generated from the following files:

/tmp/release_1.1/heart/src/problem/HeartGeometryInformation.hpp
/tmp/release_1.1/heart/src/problem/HeartGeometryInformation.cpp


Public Member Functions
	HeartGeometryInformation (TetrahedralMesh< SPACE_DIM, SPACE_DIM > &rMesh, std::string mEpiFile, std::string mEndoFile)
	HeartGeometryInformation (TetrahedralMesh< SPACE_DIM, SPACE_DIM > &rMesh, std::string mEpiFile, std::string mLVFile, std::string mRVFile)
	HeartGeometryInformation (TetrahedralMesh< SPACE_DIM, SPACE_DIM > &rMesh, std::vector< unsigned > &rNodesAtEpi, std::vector< unsigned > &rNodesAtEndo)
	HeartGeometryInformation (TetrahedralMesh< SPACE_DIM, SPACE_DIM > &rMesh, std::vector< unsigned > &rNodesAtEpi, std::vector< unsigned > &rNodesAtLv, std::vector< unsigned > &rNodesAtRv)
HeartRegionType	GetHeartRegion (unsigned nodeIndex) const
std::vector< double > &	rGetDistanceMapEpicardium ()
std::vector< double > &	rGetDistanceMapEndocardium ()
std::vector< double > &	rGetDistanceMapRightVentricle ()
std::vector< double > &	rGetDistanceMapLeftVentricle ()
const std::vector< unsigned > &	rGetNodesOnEpiSurface ()
const std::vector< unsigned > &	rGetNodesOnEndoSurface ()
const std::vector< unsigned > &	rGetNodesOnLVSurface ()
const std::vector< unsigned > &	rGetNodesOnRVSurface ()
const std::vector < HeartLayerType > &	rGetLayerForEachNode ()
double	CalculateRelativeWallPosition (unsigned nodeIndex)
void	DetermineLayerForEachNode (double epiFraction, double endoFraction)
void	WriteLayerForEachNode (std::string outputDir, std::string file)
Private Member Functions
void	GetNodesAtSurface (const std::string &surfaceFile, std::vector< unsigned > &rSurfaceNodes) const
void	ProcessLine (const std::string &line, std::set< unsigned > &surfaceNodeIndexSet) const
double	GetDistanceToEndo (unsigned nodeIndex)
double	GetDistanceToEpi (unsigned nodeIndex)
Private Attributes
std::vector< unsigned >	mEpiSurface
std::vector< unsigned >	mEndoSurface
std::vector< unsigned >	mLVSurface
std::vector< unsigned >	mRVSurface
TetrahedralMesh< SPACE_DIM, SPACE_DIM > &	mrMesh
std::vector< double >	mDistMapEpicardium
std::vector< double >	mDistMapEndocardium
std::vector< double >	mDistMapRightVentricle
std::vector< double >	mDistMapLeftVentricle
unsigned	mNumberOfSurfacesProvided
std::vector< HeartLayerType >	mLayerForEachNode
Static Private Attributes
static const double	LEFT_SEPTUM_SIZE = 2.0/3.0
static const double	RIGHT_SEPTUM_SIZE = 1.0/3.0

HeartGeometryInformation< SPACE_DIM > Class Template Reference

Public Member Functions

Private Member Functions

Private Attributes

Static Private Attributes

Detailed Description

template<unsigned SPACE_DIM> class HeartGeometryInformation< SPACE_DIM >

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<unsigned SPACE_DIM>
class HeartGeometryInformation< SPACE_DIM >