AbstractOdeSystemInformation Class Reference

#include <AbstractOdeSystemInformation.hpp>

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List of all members.

Public Member Functions

 AbstractOdeSystemInformation ()
virtual ~AbstractOdeSystemInformation ()
void SetInitialConditions (const std::vector< double > &rInitialConditions)
void SetInitialConditionsComponent (unsigned index, double initialCondition) throw (std::out_of_range)
std::vector< double > GetInitialConditions () const
const std::vector< std::string > & rGetVariableNames () const
const std::vector< std::string > & rGetVariableUnits () const
unsigned GetStateVariableNumberByName (const std::string &rName) const
std::string GetStateVariableUnitsByNumber (unsigned varNumber) const
const std::vector< std::string > & rGetParameterNames () const
const std::vector< std::string > & rGetParameterUnits () const

Protected Member Functions

virtual void Initialise ()=0

Protected Attributes

std::vector< std::string > mVariableNames
std::vector< std::string > mVariableUnits
std::vector< std::string > mParameterNames
std::vector< std::string > mParameterUnits
std::vector< double > mInitialConditions
bool mInitialised


Detailed Description

An abstract class which provides access to information about a particular ODE system *class* (as opposed to an instance).

The information available includes:

This class requires a subclass defining the Initialise method in order to set up the information. Developers may do this by defining their own subclass, but the most convenient method is likely to be to use the OdeSystemInformation class, which is a templated singleton subclass of this AbstractOdeSystemInformation class. See its documentation for details of how to use it.

Definition at line 52 of file AbstractOdeSystemInformation.hpp.


Constructor & Destructor Documentation

AbstractOdeSystemInformation::AbstractOdeSystemInformation (  ) 

Constructor.

Definition at line 35 of file AbstractOdeSystemInformation.cpp.

AbstractOdeSystemInformation::~AbstractOdeSystemInformation (  )  [virtual]

Virtual destructor since we have virtual methods.

Definition at line 40 of file AbstractOdeSystemInformation.cpp.


Member Function Documentation

virtual void AbstractOdeSystemInformation::Initialise (  )  [protected, pure virtual]

void AbstractOdeSystemInformation::SetInitialConditions ( const std::vector< double > &  rInitialConditions  ) 

Set the suggested initial conditions to use.

Parameters:
rInitialConditions vector containing initial values for the state variables

Definition at line 44 of file AbstractOdeSystemInformation.cpp.

References mInitialConditions, and mInitialised.

void AbstractOdeSystemInformation::SetInitialConditionsComponent ( unsigned  index,
double  initialCondition 
) throw (std::out_of_range)

Set a single component of the suggested initial conditions to use.

Parameters:
index the index of the state variable in the system
initialCondition the initial value for the state variable

Definition at line 50 of file AbstractOdeSystemInformation.cpp.

References mInitialConditions, and mInitialised.

std::vector< double > AbstractOdeSystemInformation::GetInitialConditions (  )  const

Get a copy of the suggested initial conditions.

Definition at line 56 of file AbstractOdeSystemInformation.cpp.

References mInitialConditions, and mInitialised.

const std::vector< std::string > & AbstractOdeSystemInformation::rGetVariableNames (  )  const

Get the variable names vector.

Definition at line 62 of file AbstractOdeSystemInformation.cpp.

References mInitialised, and mVariableNames.

const std::vector< std::string > & AbstractOdeSystemInformation::rGetVariableUnits (  )  const

Get the variable units vector.

Definition at line 68 of file AbstractOdeSystemInformation.cpp.

References mInitialised, and mVariableUnits.

unsigned AbstractOdeSystemInformation::GetStateVariableNumberByName ( const std::string &  rName  )  const

This method is used to establish a state varible's position within the vector of state variables of an ODE system. This number can then be used with the method GetStateVariableUnitsByNumber.

Parameters:
rName the name of a state variable
Returns:
the state variable's position within the vector of state variables associated with the ODE system.

Definition at line 74 of file AbstractOdeSystemInformation.cpp.

References mInitialised, and mVariableNames.

std::string AbstractOdeSystemInformation::GetStateVariableUnitsByNumber ( unsigned  varNumber  )  const

Get the units of a state variable given its index in the ODE system.

Parameters:
varNumber a state variable's position within the vector of state variables associated with the ODE system.
Returns:
the units of the state variable.

Definition at line 87 of file AbstractOdeSystemInformation.cpp.

References mInitialised, and mVariableUnits.

const std::vector< std::string > & AbstractOdeSystemInformation::rGetParameterNames (  )  const

Get the vector of parameter names.

Definition at line 94 of file AbstractOdeSystemInformation.cpp.

References mInitialised, and mParameterNames.

const std::vector< std::string > & AbstractOdeSystemInformation::rGetParameterUnits (  )  const

Get the vector of parameter units.

Definition at line 100 of file AbstractOdeSystemInformation.cpp.

References mInitialised, and mParameterUnits.


Member Data Documentation

std::vector<std::string> AbstractOdeSystemInformation::mVariableNames [protected]

std::vector<std::string> AbstractOdeSystemInformation::mVariableUnits [protected]

std::vector<std::string> AbstractOdeSystemInformation::mParameterNames [protected]

Parameter names

Definition at line 63 of file AbstractOdeSystemInformation.hpp.

Referenced by rGetParameterNames().

std::vector<std::string> AbstractOdeSystemInformation::mParameterUnits [protected]

Parameter units

Definition at line 66 of file AbstractOdeSystemInformation.hpp.

Referenced by rGetParameterUnits().

std::vector<double> AbstractOdeSystemInformation::mInitialConditions [protected]


The documentation for this class was generated from the following files:

Generated on Tue Aug 4 16:10:43 2009 for Chaste by  doxygen 1.5.5