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Ticket Summary Status Owner Type Priority Milestone
#2422 Bug in cell writer usage / visualization reopened defect high Iteration C27
#2884 HeartConfig::SetCheckpointSimulation calls CheckTimeSteps() before timesteps are consistent new defect high Future
#136 Make a build method which collates tests to be run offline. new defect normal Future
#788 Use visibility attributes when compiling shared libraries new user story normal Future
#1467 Allow Chaste to be installed as a normal collection of libraries and headers assigned jonc@… user story normal Future
#1718 Investigate whether explicit instantiation of serialization code reduces compile times new user story normal Future
#1726 Heterogeneity based on mesh attributes new user story normal Future
#1868 Create integral error norm calculators (L2, H1) new user story normal Future
#1957 Investigate whether we can unload the .so when we're done with a cell model new user story normal Future
#1973 Support LaTeX in wiki pages new user story normal Future
#2033 Periodic BCs in FE solves assigned user story normal Future
#2036 Adjust probabilities in the UpdateCellLocation in the MultipleCaBasedCellPopulation new Grazziela and Tanvi refactoring normal User projects
#2097 Create a Chaste forum for user support new user story normal Future
#2105 Get Chaste working on SKYNET GPU cluster new jmpf@… user story normal Future
#2137 Filament Tracking: Phase transformation in postprocessing new user story normal Future
#2141 Create a simple cell model compiler exe new user story normal Future
#2147 Suppress warnings about unused command line arguments (that are used!) new user story normal Future
#2152 Add an option to tell users how to run tests/exes they generate outside scons new user story normal Future
#2154 Wallclock based periodic checkpointing new user story normal Future
#2155 Periodic checkpointing requires CardiacSimulation new defect normal Future
#2164 Better archiving of users mailing list new user story normal Discussion
#2167 Create a CellML 1.1 -> 1.0 standalone exe new jonc@… user story normal User projects
#2235 Have a play with CDE - "Automatically create portable Linux applications" new user story normal Future
#2292 Investigate using PyTables for faster post-processing new user story normal Future
#2366 [GaryM] Create a simulation result lookup table maker and interpolation scheme assigned GaryM user story normal User projects
#2376 Get the warning in PETSC_MAT_PARTITION to fall back to PARMETIS_LIBRARY new defect normal Future
#2408 Deal with singularities in cell models better new user story normal Future
#2417 Mac OS X cannot checkpoint dynamic cell models new defect normal Future
#2446 Produce a leaner Chaste new user story normal Future
#2457 Extract XML helper code into its own component (or io) new user story normal Future
#2460 [FC] Avoid needing a small maximum timestep when solving with CVODE new user story normal Functional curation
#2476 Highlight external papers using Chaste on website new user story normal Discussion
#2481 Get Chaste to compile on OSX Mavericks new defect normal Iteration I4
#2527 [FC] Support multiple linked ranges in the text syntax new user story normal Functional curation
#2556 Redundant function call introduced by using VolumeTrackingModifier new tidying normal Future
#2590 Mechanics Code with HYPRE broken since PETSc 3.2 new defect normal
#2593 Run python AddVtuTimeAnnotations script automatically? new user story normal Future
#2625 Create 3D hexagonal prism vertex mesh generator new user story normal Future
#2635 Tidy up various includes new refactoring normal Future
#2640 Merge GPU code into trunk new defect normal Future
#2706 Throw an exception if a mesh.Construct* method is called when you already have a mesh new user story normal Future
#2707 Prevent cell based simulations that only work in sequential being run in parallel reopened defect normal Future
#2715 Investigate IDA solvers for Markov models assigned GaryM user story normal User projects
#2748 Add printing to file for AbstractStaticLinearPdeSolvers new user story normal Future
#2751 Issues with 'large' grids/grid spacings and Distributed Box Collection new defect normal Future
#2777 Write cell writer to output Cell Properties new defect normal Iteration M1
#2784 AbstractFunctionalCalculator doesn't work with quadratic meshes new defect normal Future
#2793 Investigate division of cells in node-based simulations assigned jameso@… user story normal Future
#2811 Work towards adopting modern C++ new refactoring normal Future
#2829 Consider refactoring the cells generator classes new refactoring normal Future
#2852 Possible Bug in MutableVertexMesh::Remesh() new defect normal Future
#2856 Adopt an enforcable unified code style new tidying normal Future
#2868 Remove unnecessary includes new fcooper tidying normal Future
#2877 AddVtuTimeAnnotations.py assertion failure in the presence of post-processing frames new defect normal Future
#2901 [Feature] ODE solver implementation: a new Rush--Larsen solver (RL21) assigned gopher user story normal Iteration 33
#2938 Give a nice readable error if there is a space in source folder path new user story normal Future
#2940 [Feature] ODE solver implementation: Runge--Kutta third order method (RK3) assigned jcervi user story normal Future
#2943 [Feature] Bidomain Assembler implementation assigned jcervi defect normal Future
#2965 Allow Conduction Velocity Maps to be calculated for any voltage threshold new user story normal Iteration 33
#2970 Remove Boost Serialization wrappers in Chaste? new user story normal Discussion
#2996 Cannot resume cardiac sim without a stimulus new user story normal Future
#3014 Support for Sundials v5.0 new user story normal Future
#3018 Issue running a single test using 36 cores in Chaste docker new defect normal Future
#3022 Update metadata on cellmlmodels to be able to retire pycml config files assigned maurice user story normal Iteration 33
#3026 Update our citation links to point to new JOSS paper new user story normal Iteration I4
#3029 Support for PETSc 3.13 new user story normal Iteration I4
#3047 Support for PETSc 3.14 new user story normal Future
#2219 StreeterFibreGenerator - allow face file attribute use new user story low Future
#2318 Merge the CVODE handling codes new refactoring low Future
#2509 Use parameters in Wnt cell cycle models new refactoring low Future
#2644 Merge more methods in FileComparison and NumericalFileComparison into the abstract class new user story low Future
#2933 gcc 7 compatibility: figure out how to remove 'throw (Exception)' new defect low Future
#2009 Filament tracking for cardiac simulations new user story blocked Future
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