Yes you can run compiled executables in parallel, for this use
mpirun -np 2 projects/ClaireM/build/optimised_native/TestSimpleAsymmetricSimulationRunner -seed 0
Where the '2' is how many cores you want to run on. That may be enough.
But if this throws errors about libraries not being available then you will need the same libraries on the environment variable
LD_LIBRARY_PATH as scons sets up, to work out what these are you can run:
scons offline_mode=1 b=GccOptNative_2 global
and this will produce a file
run-tests.sh in the chaste source folder. This is a template for HPC submission script. It defines a line that looks like
which you can copy to your terminal before running
mpirun and/or put in your
.bashrc file to run on startup.