Chaste Commit::f2ff7ee04e70ac9d06c57344df8d017dbb12b97b
CellMLToSharedLibraryConverter Class Reference

#include <CellMLToSharedLibraryConverter.hpp>

+ Collaboration diagram for CellMLToSharedLibraryConverter:

Public Member Functions

 CellMLToSharedLibraryConverter (bool preserveGeneratedSources=false, std::string component="heart")
 
DynamicCellModelLoaderPtr Convert (const FileFinder &rFilePath, bool isCollective=true)
 
void SetOptions (const std::vector< std::string > &rArgs)
 

Private Member Functions

void ConvertCellmlToSo (const std::string &rCellmlFullPath, const std::string &rCellmlFolder)
 

Private Attributes

bool mPreserveGeneratedSources
 
std::string mComponentName
 
std::string codegen_args
 

Static Private Attributes

static const std::string msSoSuffix = "so"
 

Friends

class TestDynamicallyLoadedCellModels
 

Detailed Description

This class encapsulates all the complexity needed to generate a loadable module from a CellML file.

Definition at line 50 of file CellMLToSharedLibraryConverter.hpp.

Constructor & Destructor Documentation

◆ CellMLToSharedLibraryConverter()

CellMLToSharedLibraryConverter::CellMLToSharedLibraryConverter ( bool  preserveGeneratedSources = false,
std::string  component = "heart" 
)

Create a converter.

Parameters
preserveGeneratedSourceswhether to save copies of generated C++ source files in the directory containing the .cellml file.
componentthe name of the Chaste component (or project) in which to build the loadable module (if required). Allows projects to have specialised base classes for dynamically loaded cell models.

Definition at line 68 of file CellMLToSharedLibraryConverter.cpp.

Member Function Documentation

◆ Convert()

DynamicCellModelLoaderPtr CellMLToSharedLibraryConverter::Convert ( const FileFinder rFilePath,
bool  isCollective = true 
)
Returns
a loadable module from the given file, and return a loader for it. The file can be a .so, in which case there isn't much to do, just create the loader. The interesting case comes when it is a .cellml file. If the file has any other extension, an exception is thrown.
Parameters
rFilePaththe model to load
isCollectivewhether this method is being called collectively. If it is not, then we require the .so to already exist, rather than trying to avoid race conditions.
Note
If you do not pass isCollective=false, must be called collectively.

Definition at line 75 of file CellMLToSharedLibraryConverter.cpp.

References RelativeTo::Absolute, ConvertCellmlToSo(), EXCEPTION, FileFinder::Exists(), FileFinder::GetAbsolutePath(), DynamicModelLoaderRegistry::GetLoader(), DynamicModelLoaderRegistry::Instance(), FileFinder::IsNewerThan(), msSoSuffix, and FileFinder::SetPath().

Referenced by HeartConfigRelatedCellFactory< SPACE_DIM >::LoadDynamicModel().

◆ ConvertCellmlToSo()

void CellMLToSharedLibraryConverter::ConvertCellmlToSo ( const std::string &  rCellmlFullPath,
const std::string &  rCellmlFolder 
)
private

◆ SetOptions()

void CellMLToSharedLibraryConverter::SetOptions ( const std::vector< std::string > &  rArgs)

Set the options to be passed to chaste_codegen for the given model.

Parameters
rArgsextra command-line arguments for the model conversion

Definition at line 266 of file CellMLToSharedLibraryConverter.cpp.

References codegen_args.

Friends And Related Symbol Documentation

◆ TestDynamicallyLoadedCellModels

friend class TestDynamicallyLoadedCellModels
friend

Test gets access to the msSoSuffix variable

Definition at line 54 of file CellMLToSharedLibraryConverter.hpp.

Member Data Documentation

◆ codegen_args

std::string CellMLToSharedLibraryConverter::codegen_args
private

The options to pass to codegen

Definition at line 112 of file CellMLToSharedLibraryConverter.hpp.

Referenced by ConvertCellmlToSo(), and SetOptions().

◆ mComponentName

std::string CellMLToSharedLibraryConverter::mComponentName
private

Which component to build the loadable module in.

Definition at line 106 of file CellMLToSharedLibraryConverter.hpp.

Referenced by ConvertCellmlToSo().

◆ mPreserveGeneratedSources

bool CellMLToSharedLibraryConverter::mPreserveGeneratedSources
private

Whether to save copies of generated C++ source files.

Definition at line 103 of file CellMLToSharedLibraryConverter.hpp.

Referenced by ConvertCellmlToSo().

◆ msSoSuffix

const std::string CellMLToSharedLibraryConverter::msSoSuffix = "so"
staticprivate

The .so suffix is nearly always "so" (as you might expect). On Mac OSX this is redefined to "dylib"

Set the .so suffix

Definition at line 109 of file CellMLToSharedLibraryConverter.hpp.

Referenced by Convert(), and ConvertCellmlToSo().


The documentation for this class was generated from the following files: