TysonNovakCellCycleModel.hpp

/*

Copyright (c) 2005-2012, University of Oxford.
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*/

#ifndef TYSONNOVAKCELLCYCLEMODEL_HPP_
#define TYSONNOVAKCELLCYCLEMODEL_HPP_

#include "ChasteSerialization.hpp"
#include <boost/serialization/base_object.hpp>

#include "AbstractOdeBasedCellCycleModel.hpp"
#include "TysonNovak2001OdeSystem.hpp"


class TysonNovakCellCycleModel : public AbstractOdeBasedCellCycleModel
{
private:

    friend class TestOdeBasedCellCycleModels;

    friend class boost::serialization::access;
    template<class Archive>
    void serialize(Archive & archive, const unsigned int version)
    {
        archive & boost::serialization::base_object<AbstractOdeBasedCellCycleModel>(*this);
    }

public:

    TysonNovakCellCycleModel(boost::shared_ptr<AbstractCellCycleModelOdeSolver> pOdeSolver = boost::shared_ptr<AbstractCellCycleModelOdeSolver>());

    void Initialise();

    void ResetForDivision();

    AbstractCellCycleModel* CreateCellCycleModel();

    double GetSDuration();

    double GetG2Duration();

    double GetMDuration();

    void InitialiseDaughterCell();

    double GetAverageTransitCellCycleTime();

    double GetAverageStemCellCycleTime();

    bool CanCellTerminallyDifferentiate();

    virtual void OutputCellCycleModelParameters(out_stream& rParamsFile);
};

// Declare identifier for the serializer
#include "SerializationExportWrapper.hpp"
CHASTE_CLASS_EXPORT(TysonNovakCellCycleModel)
#include "CellCycleModelOdeSolverExportWrapper.hpp"
EXPORT_CELL_CYCLE_MODEL_ODE_SOLVER(TysonNovakCellCycleModel)

#endif /*TYSONNOVAKCELLCYCLEMODEL_HPP_*/